High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals
Само за регистроване кориснике
2019
Аутори
Izrael-Živković, LidijaBeškoski, Vladimir
Rikalović, Milena G.
Kazazić, Snježana
Shapiro, Nicole
Woyke, Tanja
Gojgić-Cvijović, Gordana D.
Vrvić, Miroslav M.
Maksimović, Nela
Karadžić, Ivanka M.
Чланак у часопису (Објављена верзија)
Метаподаци
Приказ свих података о документуАпстракт
The strain Pseudomonas aeruginosa san ai, isolated from an extreme environment (industrial mineral cutting oil, pH 10), is able to survive and persist in the presence of a variety of pollutants such as heavy metals and organic chemicals. The genome of P. aeruginosa san ai is 6.98 Mbp long with a GC content of 66.08% and 6485 protein encoding genes. A large number of genes associated with proteins, responsible for microbial resistance to heavy metal ions and involved in catabolism of toxic aromatic organic compounds were identified. P. aeruginosa san ai is a highly cadmium-resistant strain. Proteome analysis of biomass after cadmium exposal confirmed a high tolerance to sublethal concentrations of cadmium (100 mg/L), based on: extracellular biosorption, bioaccumulation, biofilm formation, controlled siderophore production and a pronounced metalloprotein synthesis. Proteins responsible for survival in osmostress conditions during exposure to elevated concentrations of cadmium (200 mg/L) ...demonstrate a strong genetic potential of P. aeruginosa san ai for survival and adaptation. Sequencing of P. aeruginosa san ai genome provides valuable insights into the evolution and adaptation of this microbe to environmental extremes at the whole-genome level, as well as how to optimally use the strain in bioremediation of chemically polluted sites.
Кључне речи:
Chemical pollution / Cleaning polluted areas / Environmental isolate / Genome / Pseudomonas aeruginosaИзвор:
Extremophiles, 2019, 23, 4, 399-405Издавач:
- Springer Japan
Финансирање / пројекти:
- JGI, Project CSP 741
- Симултана биоремедијација и соилификација деградираних простора, за очување природних ресурса биолошки активних супстанци и развој и производњу биоматеријала и дијететских производа (RS-MESTD-Integrated and Interdisciplinary Research (IIR or III)-43004)
Напомена:
- Supplementary material: http://cherry.chem.bg.ac.rs/handle/123456789/3706
DOI: 10.1007/s00792-019-01092-w
ISSN: 1431-0651
WoS: 000471018700004
Scopus: 2-s2.0-85064264636
Колекције
Институција/група
Hemijski fakultet / Faculty of ChemistryTY - JOUR AU - Izrael-Živković, Lidija AU - Beškoski, Vladimir AU - Rikalović, Milena G. AU - Kazazić, Snježana AU - Shapiro, Nicole AU - Woyke, Tanja AU - Gojgić-Cvijović, Gordana D. AU - Vrvić, Miroslav M. AU - Maksimović, Nela AU - Karadžić, Ivanka M. PY - 2019 UR - https://cherry.chem.bg.ac.rs/handle/123456789/3705 AB - The strain Pseudomonas aeruginosa san ai, isolated from an extreme environment (industrial mineral cutting oil, pH 10), is able to survive and persist in the presence of a variety of pollutants such as heavy metals and organic chemicals. The genome of P. aeruginosa san ai is 6.98 Mbp long with a GC content of 66.08% and 6485 protein encoding genes. A large number of genes associated with proteins, responsible for microbial resistance to heavy metal ions and involved in catabolism of toxic aromatic organic compounds were identified. P. aeruginosa san ai is a highly cadmium-resistant strain. Proteome analysis of biomass after cadmium exposal confirmed a high tolerance to sublethal concentrations of cadmium (100 mg/L), based on: extracellular biosorption, bioaccumulation, biofilm formation, controlled siderophore production and a pronounced metalloprotein synthesis. Proteins responsible for survival in osmostress conditions during exposure to elevated concentrations of cadmium (200 mg/L) demonstrate a strong genetic potential of P. aeruginosa san ai for survival and adaptation. Sequencing of P. aeruginosa san ai genome provides valuable insights into the evolution and adaptation of this microbe to environmental extremes at the whole-genome level, as well as how to optimally use the strain in bioremediation of chemically polluted sites. PB - Springer Japan T2 - Extremophiles T1 - High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals VL - 23 IS - 4 SP - 399 EP - 405 DO - 10.1007/s00792-019-01092-w ER -
@article{ author = "Izrael-Živković, Lidija and Beškoski, Vladimir and Rikalović, Milena G. and Kazazić, Snježana and Shapiro, Nicole and Woyke, Tanja and Gojgić-Cvijović, Gordana D. and Vrvić, Miroslav M. and Maksimović, Nela and Karadžić, Ivanka M.", year = "2019", abstract = "The strain Pseudomonas aeruginosa san ai, isolated from an extreme environment (industrial mineral cutting oil, pH 10), is able to survive and persist in the presence of a variety of pollutants such as heavy metals and organic chemicals. The genome of P. aeruginosa san ai is 6.98 Mbp long with a GC content of 66.08% and 6485 protein encoding genes. A large number of genes associated with proteins, responsible for microbial resistance to heavy metal ions and involved in catabolism of toxic aromatic organic compounds were identified. P. aeruginosa san ai is a highly cadmium-resistant strain. Proteome analysis of biomass after cadmium exposal confirmed a high tolerance to sublethal concentrations of cadmium (100 mg/L), based on: extracellular biosorption, bioaccumulation, biofilm formation, controlled siderophore production and a pronounced metalloprotein synthesis. Proteins responsible for survival in osmostress conditions during exposure to elevated concentrations of cadmium (200 mg/L) demonstrate a strong genetic potential of P. aeruginosa san ai for survival and adaptation. Sequencing of P. aeruginosa san ai genome provides valuable insights into the evolution and adaptation of this microbe to environmental extremes at the whole-genome level, as well as how to optimally use the strain in bioremediation of chemically polluted sites.", publisher = "Springer Japan", journal = "Extremophiles", title = "High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals", volume = "23", number = "4", pages = "399-405", doi = "10.1007/s00792-019-01092-w" }
Izrael-Živković, L., Beškoski, V., Rikalović, M. G., Kazazić, S., Shapiro, N., Woyke, T., Gojgić-Cvijović, G. D., Vrvić, M. M., Maksimović, N.,& Karadžić, I. M.. (2019). High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals. in Extremophiles Springer Japan., 23(4), 399-405. https://doi.org/10.1007/s00792-019-01092-w
Izrael-Živković L, Beškoski V, Rikalović MG, Kazazić S, Shapiro N, Woyke T, Gojgić-Cvijović GD, Vrvić MM, Maksimović N, Karadžić IM. High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals. in Extremophiles. 2019;23(4):399-405. doi:10.1007/s00792-019-01092-w .
Izrael-Živković, Lidija, Beškoski, Vladimir, Rikalović, Milena G., Kazazić, Snježana, Shapiro, Nicole, Woyke, Tanja, Gojgić-Cvijović, Gordana D., Vrvić, Miroslav M., Maksimović, Nela, Karadžić, Ivanka M., "High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals" in Extremophiles, 23, no. 4 (2019):399-405, https://doi.org/10.1007/s00792-019-01092-w . .