TY  - DATA
AU  - Spasić, Jelena
AU  - Mandić, Mina
AU  - Đokić, Lidija
AU  - Nikodinović-Runić, Jasmina
PY  - 2018
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/3263
PB  - Springer, New York
T2  - Applied Microbiology and Biotechnology
T1  - Supplementary data for the article: Spasic, J.; Mandic, M.; Djokic, L.; Nikodinovic-Runic, J. Streptomyces Spp. in the Biocatalysis Toolbox. Appl. Microbiol. Biotechnol. 2018, 102 (8), 3513–3536. https://doi.org/10.1007/s00253-018-8884-x
UR  - https://hdl.handle.net/21.15107/rcub_cherry_3263
ER  - 

@misc{
author = "Spasić, Jelena and Mandić, Mina and Đokić, Lidija and Nikodinović-Runić, Jasmina",
year = "2018",
publisher = "Springer, New York",
journal = "Applied Microbiology and Biotechnology",
title = "Supplementary data for the article: Spasic, J.; Mandic, M.; Djokic, L.; Nikodinovic-Runic, J. Streptomyces Spp. in the Biocatalysis Toolbox. Appl. Microbiol. Biotechnol. 2018, 102 (8), 3513–3536. https://doi.org/10.1007/s00253-018-8884-x",
url = "https://hdl.handle.net/21.15107/rcub_cherry_3263"
}

Spasić, J., Mandić, M., Đokić, L.,& Nikodinović-Runić, J.. (2018). Supplementary data for the article: Spasic, J.; Mandic, M.; Djokic, L.; Nikodinovic-Runic, J. Streptomyces Spp. in the Biocatalysis Toolbox. Appl. Microbiol. Biotechnol. 2018, 102 (8), 3513–3536. https://doi.org/10.1007/s00253-018-8884-x. in Applied Microbiology and Biotechnology
Springer, New York..
https://hdl.handle.net/21.15107/rcub_cherry_3263

Spasić J, Mandić M, Đokić L, Nikodinović-Runić J. Supplementary data for the article: Spasic, J.; Mandic, M.; Djokic, L.; Nikodinovic-Runic, J. Streptomyces Spp. in the Biocatalysis Toolbox. Appl. Microbiol. Biotechnol. 2018, 102 (8), 3513–3536. https://doi.org/10.1007/s00253-018-8884-x. in Applied Microbiology and Biotechnology. 2018;.
https://hdl.handle.net/21.15107/rcub_cherry_3263 .

Spasić, Jelena, Mandić, Mina, Đokić, Lidija, Nikodinović-Runić, Jasmina, "Supplementary data for the article: Spasic, J.; Mandic, M.; Djokic, L.; Nikodinovic-Runic, J. Streptomyces Spp. in the Biocatalysis Toolbox. Appl. Microbiol. Biotechnol. 2018, 102 (8), 3513–3536. https://doi.org/10.1007/s00253-018-8884-x" in Applied Microbiology and Biotechnology (2018),
https://hdl.handle.net/21.15107/rcub_cherry_3263 .

TY  - JOUR
AU  - Spasić, Jelena
AU  - Mandić, Mina
AU  - Đokić, Lidija
AU  - Nikodinović-Runić, Jasmina
PY  - 2018
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/2115
AB  - About 20,100 research publications dated 2000-2017 were recovered searching the PubMed and Web of Science databases for Streptomyces, which are the richest known source of bioactive molecules. However, these bacteria with versatile metabolism are powerful suppliers of biocatalytic tools (enzymes) for advanced biotechnological applications such as green chemical transformations and biopharmaceutical and biofuel production. The recent technological advances, especially in DNA sequencing coupled with computational tools for protein functional and structural prediction, and the improved access to microbial diversity enabled the easier access to enzymes and the ability to engineer them to suit a wider range of biotechnological processes. The major driver behind a dramatic increase in the utilization of biocatalysis is sustainable development and the shift toward bioeconomy that will, in accordance to the UN policy agenda "Bioeconomy to 2030," become a global effort in the near future. Streptomyces spp. already play a significant role among industrial microorganisms. The intention of this minireview is to highlight the presence of Streptomyces in the toolbox of biocatalysis and to give an overview of the most important advances in novel biocatalyst discovery and applications. Judging by the steady increase in a number of recent references (228 for the 2000-2017 period), it is clear that biocatalysts from Streptomyces spp. hold promises in terms of valuable properties and applicative industrial potential.
PB  - Springer, New York
T2  - Applied Microbiology and Biotechnology
T1  - Streptomyces spp. in the biocatalysis toolbox
VL  - 102
IS  - 8
SP  - 3513
EP  - 3536
DO  - 10.1007/s00253-018-8884-x
ER  - 

@article{
author = "Spasić, Jelena and Mandić, Mina and Đokić, Lidija and Nikodinović-Runić, Jasmina",
year = "2018",
abstract = "About 20,100 research publications dated 2000-2017 were recovered searching the PubMed and Web of Science databases for Streptomyces, which are the richest known source of bioactive molecules. However, these bacteria with versatile metabolism are powerful suppliers of biocatalytic tools (enzymes) for advanced biotechnological applications such as green chemical transformations and biopharmaceutical and biofuel production. The recent technological advances, especially in DNA sequencing coupled with computational tools for protein functional and structural prediction, and the improved access to microbial diversity enabled the easier access to enzymes and the ability to engineer them to suit a wider range of biotechnological processes. The major driver behind a dramatic increase in the utilization of biocatalysis is sustainable development and the shift toward bioeconomy that will, in accordance to the UN policy agenda "Bioeconomy to 2030," become a global effort in the near future. Streptomyces spp. already play a significant role among industrial microorganisms. The intention of this minireview is to highlight the presence of Streptomyces in the toolbox of biocatalysis and to give an overview of the most important advances in novel biocatalyst discovery and applications. Judging by the steady increase in a number of recent references (228 for the 2000-2017 period), it is clear that biocatalysts from Streptomyces spp. hold promises in terms of valuable properties and applicative industrial potential.",
publisher = "Springer, New York",
journal = "Applied Microbiology and Biotechnology",
title = "Streptomyces spp. in the biocatalysis toolbox",
volume = "102",
number = "8",
pages = "3513-3536",
doi = "10.1007/s00253-018-8884-x"
}

Spasić, J., Mandić, M., Đokić, L.,& Nikodinović-Runić, J.. (2018). Streptomyces spp. in the biocatalysis toolbox. in Applied Microbiology and Biotechnology
Springer, New York., 102(8), 3513-3536.
https://doi.org/10.1007/s00253-018-8884-x

Spasić J, Mandić M, Đokić L, Nikodinović-Runić J. Streptomyces spp. in the biocatalysis toolbox. in Applied Microbiology and Biotechnology. 2018;102(8):3513-3536.
doi:10.1007/s00253-018-8884-x .

Spasić, Jelena, Mandić, Mina, Đokić, Lidija, Nikodinović-Runić, Jasmina, "Streptomyces spp. in the biocatalysis toolbox" in Applied Microbiology and Biotechnology, 102, no. 8 (2018):3513-3536,
https://doi.org/10.1007/s00253-018-8884-x . .

TY  - JOUR
AU  - Minovska, Gordana
AU  - Narančić, Tanja
AU  - Mandić, Mina
AU  - Šenerović, Lidija
AU  - Vasiljević, Branka
AU  - Nikodinović-Runić, Jasmina
PY  - 2013
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1493
AB  - Identification and characterization of novel genes belonging to microbial aromatic biodegradation pathway is of great importance as they have been proven versatile biocatalysts. In this study, the selection of 19 environmental bacterial isolates capable to degrade a wide range of aromatic compounds has been screened for the presence of five genes from the lower and the upper aromatic biodegradation pathway using PCR methodology. In the case of 4-oxalocrotonate tautomerase and toluene dioxygenases, although present in the most of environmental isolates, very limited diversity of the genes has been encountered. Highly conserved sequences of these genes in environmental samples revealed high homology with gene sequences of the characterised corresponding genes from Pseudomonas putida species. The screen using degenerate primers based on known catechol-and naphthalene dioxygenases sequences resulted in a limited number of amplified fragments. Only two catechol 2,3-dioxygenase from two Bacillus isolates were amplified and showed no significant similarities with dioxygenases from characterized organisms, but 80-90% identities with partial catechol 2,3-dioxygenase sequences from uncultured organisms. Potentially three novel catechol 1,2-dioxygenases were identified from Bacillus sp. TN102, Gordonia sp. TN103 and Rhodococcus sp. TN112. Highly homologous tautomerase and toluene dioxygenases amongst environmental samples isolated from the contaminated environment suggested horizontal gene transfer while limited success in PCR detection of the other three genes indicates that these isolates may still be a source of novel genes.
PB  - Serbian Genetics Soc, Belgrade
T2  - Genetika (Beograd)
T1  - Limited Aromatic Pathway Genes Diversity Amongst Aromatic Compound Degrading Soil Bacterial Isolates
VL  - 45
IS  - 3
SP  - 703
EP  - 716
DO  - 10.2298/GENSR1303703M
ER  - 

@article{
author = "Minovska, Gordana and Narančić, Tanja and Mandić, Mina and Šenerović, Lidija and Vasiljević, Branka and Nikodinović-Runić, Jasmina",
year = "2013",
abstract = "Identification and characterization of novel genes belonging to microbial aromatic biodegradation pathway is of great importance as they have been proven versatile biocatalysts. In this study, the selection of 19 environmental bacterial isolates capable to degrade a wide range of aromatic compounds has been screened for the presence of five genes from the lower and the upper aromatic biodegradation pathway using PCR methodology. In the case of 4-oxalocrotonate tautomerase and toluene dioxygenases, although present in the most of environmental isolates, very limited diversity of the genes has been encountered. Highly conserved sequences of these genes in environmental samples revealed high homology with gene sequences of the characterised corresponding genes from Pseudomonas putida species. The screen using degenerate primers based on known catechol-and naphthalene dioxygenases sequences resulted in a limited number of amplified fragments. Only two catechol 2,3-dioxygenase from two Bacillus isolates were amplified and showed no significant similarities with dioxygenases from characterized organisms, but 80-90% identities with partial catechol 2,3-dioxygenase sequences from uncultured organisms. Potentially three novel catechol 1,2-dioxygenases were identified from Bacillus sp. TN102, Gordonia sp. TN103 and Rhodococcus sp. TN112. Highly homologous tautomerase and toluene dioxygenases amongst environmental samples isolated from the contaminated environment suggested horizontal gene transfer while limited success in PCR detection of the other three genes indicates that these isolates may still be a source of novel genes.",
publisher = "Serbian Genetics Soc, Belgrade",
journal = "Genetika (Beograd)",
title = "Limited Aromatic Pathway Genes Diversity Amongst Aromatic Compound Degrading Soil Bacterial Isolates",
volume = "45",
number = "3",
pages = "703-716",
doi = "10.2298/GENSR1303703M"
}

Minovska, G., Narančić, T., Mandić, M., Šenerović, L., Vasiljević, B.,& Nikodinović-Runić, J.. (2013). Limited Aromatic Pathway Genes Diversity Amongst Aromatic Compound Degrading Soil Bacterial Isolates. in Genetika (Beograd)
Serbian Genetics Soc, Belgrade., 45(3), 703-716.
https://doi.org/10.2298/GENSR1303703M

Minovska G, Narančić T, Mandić M, Šenerović L, Vasiljević B, Nikodinović-Runić J. Limited Aromatic Pathway Genes Diversity Amongst Aromatic Compound Degrading Soil Bacterial Isolates. in Genetika (Beograd). 2013;45(3):703-716.
doi:10.2298/GENSR1303703M .

Minovska, Gordana, Narančić, Tanja, Mandić, Mina, Šenerović, Lidija, Vasiljević, Branka, Nikodinović-Runić, Jasmina, "Limited Aromatic Pathway Genes Diversity Amongst Aromatic Compound Degrading Soil Bacterial Isolates" in Genetika (Beograd), 45, no. 3 (2013):703-716,
https://doi.org/10.2298/GENSR1303703M . .