TY  - JOUR
AU  - Božinovski, Dragana M.
AU  - Petrović, Predrag
AU  - Belić, Milivoj R.
AU  - Zarić, Snežana D.
PY  - 2018
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/2154
AB  - The interaction of amyloid -sheet segments with graphene-flake models is investigated by using DFT calculations. The structure of -sheets of selected amyloid segments is based on crystal structures obtained from the Protein Data Bank. Our study, based on DFT calculations for model systems, indicates that the interaction in amyloid-graphene aggregates can be stronger than the interaction in the respective amyloid-amyloid aggregates. The results also indicate an important specific role of aromatic sidechains in amyloid-graphene interactions. This work confirms recent experimental evidence that graphene and its modifications inhibit the aggregation of -amyloid peptides.
PB  - Wiley-V C H Verlag Gmbh, Weinheim
T2  - Chemphyschem
T1  - Insight into the Interactions of Amyloid -Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids that Interact with Graphene
VL  - 19
IS  - 10
SP  - 1226
EP  - 1233
DO  - 10.1002/cphc.201700847
ER  - 

@article{
author = "Božinovski, Dragana M. and Petrović, Predrag and Belić, Milivoj R. and Zarić, Snežana D.",
year = "2018",
abstract = "The interaction of amyloid -sheet segments with graphene-flake models is investigated by using DFT calculations. The structure of -sheets of selected amyloid segments is based on crystal structures obtained from the Protein Data Bank. Our study, based on DFT calculations for model systems, indicates that the interaction in amyloid-graphene aggregates can be stronger than the interaction in the respective amyloid-amyloid aggregates. The results also indicate an important specific role of aromatic sidechains in amyloid-graphene interactions. This work confirms recent experimental evidence that graphene and its modifications inhibit the aggregation of -amyloid peptides.",
publisher = "Wiley-V C H Verlag Gmbh, Weinheim",
journal = "Chemphyschem",
title = "Insight into the Interactions of Amyloid -Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids that Interact with Graphene",
volume = "19",
number = "10",
pages = "1226-1233",
doi = "10.1002/cphc.201700847"
}

Božinovski, D. M., Petrović, P., Belić, M. R.,& Zarić, S. D.. (2018). Insight into the Interactions of Amyloid -Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids that Interact with Graphene. in Chemphyschem
Wiley-V C H Verlag Gmbh, Weinheim., 19(10), 1226-1233.
https://doi.org/10.1002/cphc.201700847

Božinovski DM, Petrović P, Belić MR, Zarić SD. Insight into the Interactions of Amyloid -Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids that Interact with Graphene. in Chemphyschem. 2018;19(10):1226-1233.
doi:10.1002/cphc.201700847 .

Božinovski, Dragana M., Petrović, Predrag, Belić, Milivoj R., Zarić, Snežana D., "Insight into the Interactions of Amyloid -Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids that Interact with Graphene" in Chemphyschem, 19, no. 10 (2018):1226-1233,
https://doi.org/10.1002/cphc.201700847 . .

TY  - JOUR
AU  - Božinovski, Dragana M.
AU  - Petrović, Predrag
AU  - Belić, Milivoj R.
AU  - Zarić, Snežana D.
PY  - 2018
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/3226
AB  - The interaction of amyloid -sheet segments with graphene-flake models is investigated by using DFT calculations. The structure of -sheets of selected amyloid segments is based on crystal structures obtained from the Protein Data Bank. Our study, based on DFT calculations for model systems, indicates that the interaction in amyloid-graphene aggregates can be stronger than the interaction in the respective amyloid-amyloid aggregates. The results also indicate an important specific role of aromatic sidechains in amyloid-graphene interactions. This work confirms recent experimental evidence that graphene and its modifications inhibit the aggregation of -amyloid peptides.
PB  - Wiley-V C H Verlag Gmbh, Weinheim
T2  - Chemphyschem
T1  - Insight into the Interactions of Amyloid -Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids that Interact with Graphene
VL  - 19
IS  - 10
SP  - 1226
EP  - 1233
DO  - 10.1002/cphc.201700847
ER  - 

@article{
author = "Božinovski, Dragana M. and Petrović, Predrag and Belić, Milivoj R. and Zarić, Snežana D.",
year = "2018",
abstract = "The interaction of amyloid -sheet segments with graphene-flake models is investigated by using DFT calculations. The structure of -sheets of selected amyloid segments is based on crystal structures obtained from the Protein Data Bank. Our study, based on DFT calculations for model systems, indicates that the interaction in amyloid-graphene aggregates can be stronger than the interaction in the respective amyloid-amyloid aggregates. The results also indicate an important specific role of aromatic sidechains in amyloid-graphene interactions. This work confirms recent experimental evidence that graphene and its modifications inhibit the aggregation of -amyloid peptides.",
publisher = "Wiley-V C H Verlag Gmbh, Weinheim",
journal = "Chemphyschem",
title = "Insight into the Interactions of Amyloid -Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids that Interact with Graphene",
volume = "19",
number = "10",
pages = "1226-1233",
doi = "10.1002/cphc.201700847"
}

Božinovski, D. M., Petrović, P., Belić, M. R.,& Zarić, S. D.. (2018). Insight into the Interactions of Amyloid -Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids that Interact with Graphene. in Chemphyschem
Wiley-V C H Verlag Gmbh, Weinheim., 19(10), 1226-1233.
https://doi.org/10.1002/cphc.201700847

Božinovski DM, Petrović P, Belić MR, Zarić SD. Insight into the Interactions of Amyloid -Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids that Interact with Graphene. in Chemphyschem. 2018;19(10):1226-1233.
doi:10.1002/cphc.201700847 .

Božinovski, Dragana M., Petrović, Predrag, Belić, Milivoj R., Zarić, Snežana D., "Insight into the Interactions of Amyloid -Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids that Interact with Graphene" in Chemphyschem, 19, no. 10 (2018):1226-1233,
https://doi.org/10.1002/cphc.201700847 . .

TY  - DATA
AU  - Božinovski, Dragana M.
AU  - Petrović, Predrag
AU  - Belić, Milivoj R.
AU  - Zarić, Snežana D.
PY  - 2018
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/3227
PB  - Wiley-V C H Verlag Gmbh, Weinheim
T2  - Chemphyschem
T1  - Supplementary data for the article: Božinovski, D. M.; Petrović, P. V.; Belić, M. R.; Zarić, S. D. Insight into the Interactions of Amyloid β-Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids That Interact with Graphene. ChemPhysChem 2018, 19 (10), 1226–1233. https://doi.org/10.1002/cphc.201700847
UR  - https://hdl.handle.net/21.15107/rcub_cherry_3227
ER  - 

@misc{
author = "Božinovski, Dragana M. and Petrović, Predrag and Belić, Milivoj R. and Zarić, Snežana D.",
year = "2018",
publisher = "Wiley-V C H Verlag Gmbh, Weinheim",
journal = "Chemphyschem",
title = "Supplementary data for the article: Božinovski, D. M.; Petrović, P. V.; Belić, M. R.; Zarić, S. D. Insight into the Interactions of Amyloid β-Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids That Interact with Graphene. ChemPhysChem 2018, 19 (10), 1226–1233. https://doi.org/10.1002/cphc.201700847",
url = "https://hdl.handle.net/21.15107/rcub_cherry_3227"
}

Božinovski, D. M., Petrović, P., Belić, M. R.,& Zarić, S. D.. (2018). Supplementary data for the article: Božinovski, D. M.; Petrović, P. V.; Belić, M. R.; Zarić, S. D. Insight into the Interactions of Amyloid β-Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids That Interact with Graphene. ChemPhysChem 2018, 19 (10), 1226–1233. https://doi.org/10.1002/cphc.201700847. in Chemphyschem
Wiley-V C H Verlag Gmbh, Weinheim..
https://hdl.handle.net/21.15107/rcub_cherry_3227

Božinovski DM, Petrović P, Belić MR, Zarić SD. Supplementary data for the article: Božinovski, D. M.; Petrović, P. V.; Belić, M. R.; Zarić, S. D. Insight into the Interactions of Amyloid β-Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids That Interact with Graphene. ChemPhysChem 2018, 19 (10), 1226–1233. https://doi.org/10.1002/cphc.201700847. in Chemphyschem. 2018;.
https://hdl.handle.net/21.15107/rcub_cherry_3227 .

Božinovski, Dragana M., Petrović, Predrag, Belić, Milivoj R., Zarić, Snežana D., "Supplementary data for the article: Božinovski, D. M.; Petrović, P. V.; Belić, M. R.; Zarić, S. D. Insight into the Interactions of Amyloid β-Sheets with Graphene Flakes: Scrutinizing the Role of Aromatic Residues in Amyloids That Interact with Graphene. ChemPhysChem 2018, 19 (10), 1226–1233. https://doi.org/10.1002/cphc.201700847" in Chemphyschem (2018),
https://hdl.handle.net/21.15107/rcub_cherry_3227 .

TY  - JOUR
AU  - Stanković, Ivana M.
AU  - Božinovski, Dragana M.
AU  - Brothers, Edward N.
AU  - Belić, Milivoj R.
AU  - Hall, Michael B.
AU  - Zarić, Snežana D.
PY  - 2017
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/2566
AB  - Aromatic-aromatic interactions have long been considered important in the self assembly of amyloids. In spite of their importance, aromatic amino acids are not detected in every amyloid. In the present study, the occurrence and geometry of these interactions were analyzed for the amyloid structures found in the Protein Data Bank. The data confirm that aromatic amino acids are not crucial for amyloid fibril formation. In fact, aromatic-aliphatic interactions are more frequent than the aromatic-aromatic interactions. Aromatic-aliphatic interactions are present in higher numbers of structures and in certain amyloid sequences they are more frequent than aromatic-aromatic interactions. An analysis of aromatic/aromatic interactions shows different interaction geometries in intrasheet and intersheet contacts; the intrasheet aromatic-aromatic interactions are mostly parallel and displaced, while intersheet interactions are not parallel. Thus, among the aromatic-aromatic interactions there are important edge-to-face attractions in addition to parallel stacking ones.
PB  - Amer Chemical Soc, Washington
T2  - Crystal Growth and Design
T1  - Interactions of Aromatic Residues in Amyloids: A Survey of Protein Data Bank Crystallographic Data
VL  - 17
IS  - 12
SP  - 6353
EP  - 6362
DO  - 10.1021/acs.cgd.7b01035
ER  - 

@article{
author = "Stanković, Ivana M. and Božinovski, Dragana M. and Brothers, Edward N. and Belić, Milivoj R. and Hall, Michael B. and Zarić, Snežana D.",
year = "2017",
abstract = "Aromatic-aromatic interactions have long been considered important in the self assembly of amyloids. In spite of their importance, aromatic amino acids are not detected in every amyloid. In the present study, the occurrence and geometry of these interactions were analyzed for the amyloid structures found in the Protein Data Bank. The data confirm that aromatic amino acids are not crucial for amyloid fibril formation. In fact, aromatic-aliphatic interactions are more frequent than the aromatic-aromatic interactions. Aromatic-aliphatic interactions are present in higher numbers of structures and in certain amyloid sequences they are more frequent than aromatic-aromatic interactions. An analysis of aromatic/aromatic interactions shows different interaction geometries in intrasheet and intersheet contacts; the intrasheet aromatic-aromatic interactions are mostly parallel and displaced, while intersheet interactions are not parallel. Thus, among the aromatic-aromatic interactions there are important edge-to-face attractions in addition to parallel stacking ones.",
publisher = "Amer Chemical Soc, Washington",
journal = "Crystal Growth and Design",
title = "Interactions of Aromatic Residues in Amyloids: A Survey of Protein Data Bank Crystallographic Data",
volume = "17",
number = "12",
pages = "6353-6362",
doi = "10.1021/acs.cgd.7b01035"
}

Stanković, I. M., Božinovski, D. M., Brothers, E. N., Belić, M. R., Hall, M. B.,& Zarić, S. D.. (2017). Interactions of Aromatic Residues in Amyloids: A Survey of Protein Data Bank Crystallographic Data. in Crystal Growth and Design
Amer Chemical Soc, Washington., 17(12), 6353-6362.
https://doi.org/10.1021/acs.cgd.7b01035

Stanković IM, Božinovski DM, Brothers EN, Belić MR, Hall MB, Zarić SD. Interactions of Aromatic Residues in Amyloids: A Survey of Protein Data Bank Crystallographic Data. in Crystal Growth and Design. 2017;17(12):6353-6362.
doi:10.1021/acs.cgd.7b01035 .

Stanković, Ivana M., Božinovski, Dragana M., Brothers, Edward N., Belić, Milivoj R., Hall, Michael B., Zarić, Snežana D., "Interactions of Aromatic Residues in Amyloids: A Survey of Protein Data Bank Crystallographic Data" in Crystal Growth and Design, 17, no. 12 (2017):6353-6362,
https://doi.org/10.1021/acs.cgd.7b01035 . .

TY  - JOUR
AU  - Dragelj, Jovan Lj.
AU  - Stanković, Ivana M.
AU  - Božinovski, Dragana M.
AU  - Meyer, Tim
AU  - Veljković, Dušan Ž.
AU  - Medaković, Vesna
AU  - Knapp, Ernst-Walter
AU  - Zarić, Snežana D.
PY  - 2016
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1910
AB  - C-H/O interactions of aromatic C-H donors within proteins have been studied by analyzing the data in the Protein Data Bank (PDB). The C-H/O interactions were studied between aromatic donors; phenylalanine, tyrosine, and tryptophan and the acceptors; alcohol, backbone amide, and side-chain amide groups. The analysis of the C-H-O angle indicates that protein C-H donors do not show a preference for linear contacts. Although there is no tendency for linear C-H/O interactions, there are only around 3% of bifurcated C-H/O interactions. Furthermore, the analyses of the C-H/O interactions indicate an influence of simultaneous classical hydrogen bonds, especially for the tyrosine systems. The calculated electrostatic potential maps for model systems can explain the results of the crystallographic analysis. These results can be important for recognizing the C-H/O interaction of aromatic rings in the crystal structures of proteic systems.
PB  - Amer Chemical Soc, Washington
T2  - Crystal Growth and Design
T1  - C-H/O Interactions of Aromatic CH Donors within Proteins: A Crystallographic Study
VL  - 16
IS  - 4
SP  - 1948
EP  - 1957
DO  - 10.1021/acs.cgd.5b01543
ER  - 

@article{
author = "Dragelj, Jovan Lj. and Stanković, Ivana M. and Božinovski, Dragana M. and Meyer, Tim and Veljković, Dušan Ž. and Medaković, Vesna and Knapp, Ernst-Walter and Zarić, Snežana D.",
year = "2016",
abstract = "C-H/O interactions of aromatic C-H donors within proteins have been studied by analyzing the data in the Protein Data Bank (PDB). The C-H/O interactions were studied between aromatic donors; phenylalanine, tyrosine, and tryptophan and the acceptors; alcohol, backbone amide, and side-chain amide groups. The analysis of the C-H-O angle indicates that protein C-H donors do not show a preference for linear contacts. Although there is no tendency for linear C-H/O interactions, there are only around 3% of bifurcated C-H/O interactions. Furthermore, the analyses of the C-H/O interactions indicate an influence of simultaneous classical hydrogen bonds, especially for the tyrosine systems. The calculated electrostatic potential maps for model systems can explain the results of the crystallographic analysis. These results can be important for recognizing the C-H/O interaction of aromatic rings in the crystal structures of proteic systems.",
publisher = "Amer Chemical Soc, Washington",
journal = "Crystal Growth and Design",
title = "C-H/O Interactions of Aromatic CH Donors within Proteins: A Crystallographic Study",
volume = "16",
number = "4",
pages = "1948-1957",
doi = "10.1021/acs.cgd.5b01543"
}

Dragelj, J. Lj., Stanković, I. M., Božinovski, D. M., Meyer, T., Veljković, D. Ž., Medaković, V., Knapp, E.,& Zarić, S. D.. (2016). C-H/O Interactions of Aromatic CH Donors within Proteins: A Crystallographic Study. in Crystal Growth and Design
Amer Chemical Soc, Washington., 16(4), 1948-1957.
https://doi.org/10.1021/acs.cgd.5b01543

Dragelj JL, Stanković IM, Božinovski DM, Meyer T, Veljković DŽ, Medaković V, Knapp E, Zarić SD. C-H/O Interactions of Aromatic CH Donors within Proteins: A Crystallographic Study. in Crystal Growth and Design. 2016;16(4):1948-1957.
doi:10.1021/acs.cgd.5b01543 .

Dragelj, Jovan Lj., Stanković, Ivana M., Božinovski, Dragana M., Meyer, Tim, Veljković, Dušan Ž., Medaković, Vesna, Knapp, Ernst-Walter, Zarić, Snežana D., "C-H/O Interactions of Aromatic CH Donors within Proteins: A Crystallographic Study" in Crystal Growth and Design, 16, no. 4 (2016):1948-1957,
https://doi.org/10.1021/acs.cgd.5b01543 . .

TY  - DATA
AU  - Dragelj, Jovan Lj.
AU  - Stanković, Ivana M.
AU  - Božinovski, Dragana M.
AU  - Meyer, Tim
AU  - Veljković, Dušan Ž.
AU  - Medaković, Vesna
AU  - Knapp, Ernst-Walter
AU  - Zarić, Snežana D.
PY  - 2016
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/3393
PB  - Amer Chemical Soc, Washington
T2  - Crystal Growth and Design
T1  - Supplementary data for the article: Dragelj, J. Lj.; Stanković, I. M.; Božinovski, D. M.; Meyer, T.; Veljković, D. Z.; Medaković, V. B.; Knapp, E.-W.; Zarić, S. D. C-H/O Interactions of Aromatic CH Donors within Proteins: A Crystallographic Study. Crystal Growth and Design 2016, 16 (4), 1948–1957. https://doi.org/10.1021/acs.cgd.5b01543
UR  - https://hdl.handle.net/21.15107/rcub_cherry_3393
ER  - 

@misc{
author = "Dragelj, Jovan Lj. and Stanković, Ivana M. and Božinovski, Dragana M. and Meyer, Tim and Veljković, Dušan Ž. and Medaković, Vesna and Knapp, Ernst-Walter and Zarić, Snežana D.",
year = "2016",
publisher = "Amer Chemical Soc, Washington",
journal = "Crystal Growth and Design",
title = "Supplementary data for the article: Dragelj, J. Lj.; Stanković, I. M.; Božinovski, D. M.; Meyer, T.; Veljković, D. Z.; Medaković, V. B.; Knapp, E.-W.; Zarić, S. D. C-H/O Interactions of Aromatic CH Donors within Proteins: A Crystallographic Study. Crystal Growth and Design 2016, 16 (4), 1948–1957. https://doi.org/10.1021/acs.cgd.5b01543",
url = "https://hdl.handle.net/21.15107/rcub_cherry_3393"
}

Dragelj, J. Lj., Stanković, I. M., Božinovski, D. M., Meyer, T., Veljković, D. Ž., Medaković, V., Knapp, E.,& Zarić, S. D.. (2016). Supplementary data for the article: Dragelj, J. Lj.; Stanković, I. M.; Božinovski, D. M.; Meyer, T.; Veljković, D. Z.; Medaković, V. B.; Knapp, E.-W.; Zarić, S. D. C-H/O Interactions of Aromatic CH Donors within Proteins: A Crystallographic Study. Crystal Growth and Design 2016, 16 (4), 1948–1957. https://doi.org/10.1021/acs.cgd.5b01543. in Crystal Growth and Design
Amer Chemical Soc, Washington..
https://hdl.handle.net/21.15107/rcub_cherry_3393

Dragelj JL, Stanković IM, Božinovski DM, Meyer T, Veljković DŽ, Medaković V, Knapp E, Zarić SD. Supplementary data for the article: Dragelj, J. Lj.; Stanković, I. M.; Božinovski, D. M.; Meyer, T.; Veljković, D. Z.; Medaković, V. B.; Knapp, E.-W.; Zarić, S. D. C-H/O Interactions of Aromatic CH Donors within Proteins: A Crystallographic Study. Crystal Growth and Design 2016, 16 (4), 1948–1957. https://doi.org/10.1021/acs.cgd.5b01543. in Crystal Growth and Design. 2016;.
https://hdl.handle.net/21.15107/rcub_cherry_3393 .

Dragelj, Jovan Lj., Stanković, Ivana M., Božinovski, Dragana M., Meyer, Tim, Veljković, Dušan Ž., Medaković, Vesna, Knapp, Ernst-Walter, Zarić, Snežana D., "Supplementary data for the article: Dragelj, J. Lj.; Stanković, I. M.; Božinovski, D. M.; Meyer, T.; Veljković, D. Z.; Medaković, V. B.; Knapp, E.-W.; Zarić, S. D. C-H/O Interactions of Aromatic CH Donors within Proteins: A Crystallographic Study. Crystal Growth and Design 2016, 16 (4), 1948–1957. https://doi.org/10.1021/acs.cgd.5b01543" in Crystal Growth and Design (2016),
https://hdl.handle.net/21.15107/rcub_cherry_3393 .