Shapiro, Nicole

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  • Shapiro, Nicole (2)
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Author's Bibliography

High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals

Izrael-Živković, Lidija; Beškoski, Vladimir; Rikalović, Milena G.; Kazazić, Snježana; Shapiro, Nicole; Woyke, Tanja; Gojgić-Cvijović, Gordana D.; Vrvić, Miroslav M.; Maksimović, Nela; Karadžić, Ivanka M.

(Springer Japan, 2019)

TY  - JOUR
AU  - Izrael-Živković, Lidija
AU  - Beškoski, Vladimir
AU  - Rikalović, Milena G.
AU  - Kazazić, Snježana
AU  - Shapiro, Nicole
AU  - Woyke, Tanja
AU  - Gojgić-Cvijović, Gordana D.
AU  - Vrvić, Miroslav M.
AU  - Maksimović, Nela
AU  - Karadžić, Ivanka M.
PY  - 2019
UR  - http://cherry.chem.bg.ac.rs/handle/123456789/3705
AB  - The strain Pseudomonas aeruginosa san ai, isolated from an extreme environment (industrial mineral cutting oil, pH 10), is able to survive and persist in the presence of a variety of pollutants such as heavy metals and organic chemicals. The genome of P. aeruginosa san ai is 6.98 Mbp long with a GC content of 66.08% and 6485 protein encoding genes. A large number of genes associated with proteins, responsible for microbial resistance to heavy metal ions and involved in catabolism of toxic aromatic organic compounds were identified. P. aeruginosa san ai is a highly cadmium-resistant strain. Proteome analysis of biomass after cadmium exposal confirmed a high tolerance to sublethal concentrations of cadmium (100 mg/L), based on: extracellular biosorption, bioaccumulation, biofilm formation, controlled siderophore production and a pronounced metalloprotein synthesis. Proteins responsible for survival in osmostress conditions during exposure to elevated concentrations of cadmium (200 mg/L) demonstrate a strong genetic potential of P. aeruginosa san ai for survival and adaptation. Sequencing of P. aeruginosa san ai genome provides valuable insights into the evolution and adaptation of this microbe to environmental extremes at the whole-genome level, as well as how to optimally use the strain in bioremediation of chemically polluted sites.
PB  - Springer Japan
T2  - Extremophiles
T1  - High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals
VL  - 23
IS  - 4
SP  - 399
EP  - 405
DO  - 10.1007/s00792-019-01092-w
ER  - 
@article{
author = "Izrael-Živković, Lidija and Beškoski, Vladimir and Rikalović, Milena G. and Kazazić, Snježana and Shapiro, Nicole and Woyke, Tanja and Gojgić-Cvijović, Gordana D. and Vrvić, Miroslav M. and Maksimović, Nela and Karadžić, Ivanka M.",
year = "2019",
abstract = "The strain Pseudomonas aeruginosa san ai, isolated from an extreme environment (industrial mineral cutting oil, pH 10), is able to survive and persist in the presence of a variety of pollutants such as heavy metals and organic chemicals. The genome of P. aeruginosa san ai is 6.98 Mbp long with a GC content of 66.08% and 6485 protein encoding genes. A large number of genes associated with proteins, responsible for microbial resistance to heavy metal ions and involved in catabolism of toxic aromatic organic compounds were identified. P. aeruginosa san ai is a highly cadmium-resistant strain. Proteome analysis of biomass after cadmium exposal confirmed a high tolerance to sublethal concentrations of cadmium (100 mg/L), based on: extracellular biosorption, bioaccumulation, biofilm formation, controlled siderophore production and a pronounced metalloprotein synthesis. Proteins responsible for survival in osmostress conditions during exposure to elevated concentrations of cadmium (200 mg/L) demonstrate a strong genetic potential of P. aeruginosa san ai for survival and adaptation. Sequencing of P. aeruginosa san ai genome provides valuable insights into the evolution and adaptation of this microbe to environmental extremes at the whole-genome level, as well as how to optimally use the strain in bioremediation of chemically polluted sites.",
publisher = "Springer Japan",
journal = "Extremophiles",
title = "High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals",
volume = "23",
number = "4",
pages = "399-405",
doi = "10.1007/s00792-019-01092-w"
}
Izrael-Živković, L., Beškoski, V., Rikalović, M. G., Kazazić, S., Shapiro, N., Woyke, T., Gojgić-Cvijović, G. D., Vrvić, M. M., Maksimović, N.,& Karadžić, I. M.. (2019). High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals. in Extremophiles
Springer Japan., 23(4), 399-405.
https://doi.org/10.1007/s00792-019-01092-w
Izrael-Živković L, Beškoski V, Rikalović MG, Kazazić S, Shapiro N, Woyke T, Gojgić-Cvijović GD, Vrvić MM, Maksimović N, Karadžić IM. High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals. in Extremophiles. 2019;23(4):399-405.
doi:10.1007/s00792-019-01092-w .
Izrael-Živković, Lidija, Beškoski, Vladimir, Rikalović, Milena G., Kazazić, Snježana, Shapiro, Nicole, Woyke, Tanja, Gojgić-Cvijović, Gordana D., Vrvić, Miroslav M., Maksimović, Nela, Karadžić, Ivanka M., "High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals" in Extremophiles, 23, no. 4 (2019):399-405,
https://doi.org/10.1007/s00792-019-01092-w . .
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Supplementary data for the article: Izrael-Živković, L.; Beškoski, V.; Rikalović, M.; Kazazić, S.; Shapiro, N.; Woyke, T.; Gojgić-Cvijović, G.; Vrvić, M. M.; Maksimović, N.; Karadžić, I. High-Quality Draft Genome Sequence of Pseudomonas Aeruginosa San Ai, an Environmental Isolate Resistant to Heavy Metals. Extremophiles 2019, 23 (4), 399–405. https://doi.org/10.1007/s00792-019-01092-w

Beškoski, Vladimir; Rikalović, Milena G.; Kazazić, Snježana; Shapiro, Nicole; Woyke, Tanja; Gojgić-Cvijović, Gordana D.; Vrvić, Miroslav M.; Maksimović, Nela; Karadžić, Ivanka M.

(Springer Japan, 2019)

TY  - DATA
AU  - Beškoski, Vladimir
AU  - Rikalović, Milena G.
AU  - Kazazić, Snježana
AU  - Shapiro, Nicole
AU  - Woyke, Tanja
AU  - Gojgić-Cvijović, Gordana D.
AU  - Vrvić, Miroslav M.
AU  - Maksimović, Nela
AU  - Karadžić, Ivanka M.
PY  - 2019
UR  - http://cherry.chem.bg.ac.rs/handle/123456789/3706
PB  - Springer Japan
T2  - Extremophiles
T1  - Supplementary data for the article: Izrael-Živković, L.; Beškoski, V.; Rikalović, M.; Kazazić, S.; Shapiro, N.; Woyke, T.; Gojgić-Cvijović, G.; Vrvić, M. M.; Maksimović, N.; Karadžić, I. High-Quality Draft Genome Sequence of Pseudomonas Aeruginosa San Ai, an Environmental Isolate Resistant to Heavy Metals. Extremophiles 2019, 23 (4), 399–405. https://doi.org/10.1007/s00792-019-01092-w
ER  - 
@misc{
author = "Beškoski, Vladimir and Rikalović, Milena G. and Kazazić, Snježana and Shapiro, Nicole and Woyke, Tanja and Gojgić-Cvijović, Gordana D. and Vrvić, Miroslav M. and Maksimović, Nela and Karadžić, Ivanka M.",
year = "2019",
publisher = "Springer Japan",
journal = "Extremophiles",
title = "Supplementary data for the article: Izrael-Živković, L.; Beškoski, V.; Rikalović, M.; Kazazić, S.; Shapiro, N.; Woyke, T.; Gojgić-Cvijović, G.; Vrvić, M. M.; Maksimović, N.; Karadžić, I. High-Quality Draft Genome Sequence of Pseudomonas Aeruginosa San Ai, an Environmental Isolate Resistant to Heavy Metals. Extremophiles 2019, 23 (4), 399–405. https://doi.org/10.1007/s00792-019-01092-w"
}
Beškoski, V., Rikalović, M. G., Kazazić, S., Shapiro, N., Woyke, T., Gojgić-Cvijović, G. D., Vrvić, M. M., Maksimović, N.,& Karadžić, I. M.. (2019). Supplementary data for the article: Izrael-Živković, L.; Beškoski, V.; Rikalović, M.; Kazazić, S.; Shapiro, N.; Woyke, T.; Gojgić-Cvijović, G.; Vrvić, M. M.; Maksimović, N.; Karadžić, I. High-Quality Draft Genome Sequence of Pseudomonas Aeruginosa San Ai, an Environmental Isolate Resistant to Heavy Metals. Extremophiles 2019, 23 (4), 399–405. https://doi.org/10.1007/s00792-019-01092-w. in Extremophiles
Springer Japan..
Beškoski V, Rikalović MG, Kazazić S, Shapiro N, Woyke T, Gojgić-Cvijović GD, Vrvić MM, Maksimović N, Karadžić IM. Supplementary data for the article: Izrael-Živković, L.; Beškoski, V.; Rikalović, M.; Kazazić, S.; Shapiro, N.; Woyke, T.; Gojgić-Cvijović, G.; Vrvić, M. M.; Maksimović, N.; Karadžić, I. High-Quality Draft Genome Sequence of Pseudomonas Aeruginosa San Ai, an Environmental Isolate Resistant to Heavy Metals. Extremophiles 2019, 23 (4), 399–405. https://doi.org/10.1007/s00792-019-01092-w. in Extremophiles. 2019;..
Beškoski, Vladimir, Rikalović, Milena G., Kazazić, Snježana, Shapiro, Nicole, Woyke, Tanja, Gojgić-Cvijović, Gordana D., Vrvić, Miroslav M., Maksimović, Nela, Karadžić, Ivanka M., "Supplementary data for the article: Izrael-Živković, L.; Beškoski, V.; Rikalović, M.; Kazazić, S.; Shapiro, N.; Woyke, T.; Gojgić-Cvijović, G.; Vrvić, M. M.; Maksimović, N.; Karadžić, I. High-Quality Draft Genome Sequence of Pseudomonas Aeruginosa San Ai, an Environmental Isolate Resistant to Heavy Metals. Extremophiles 2019, 23 (4), 399–405. https://doi.org/10.1007/s00792-019-01092-w" in Extremophiles (2019).