Proučavanje odnosa reaktivnosti, nekovalentnih interakcija i strukture molekula i modelovanje hemijskih sistema

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Proučavanje odnosa reaktivnosti, nekovalentnih interakcija i strukture molekula i modelovanje hemijskih sistema (en)
Проучавање односа реактивности, нековалентних интеракција и структуре молекула и моделовање хемијских система (sr)
Proučavanje odnosa reaktivnosti, nekovalentnih interakcija i strukture molekula i modelovanje hemijskih sistema (sr_RS)
Authors

Publications

Non-covalent interactions across subunit interfaces in Sm proteins

Zarić, Božidarka L.; Jovanović, Vesna B.; Stojanović, Srđan Đ.

(Academic Press Ltd- Elsevier Science Ltd, London, 2011)

TY  - JOUR
AU  - Zarić, Božidarka L.
AU  - Jovanović, Vesna B.
AU  - Stojanović, Srđan Đ.
PY  - 2011
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1140
AB  - The distinguishing property of Sm protein associations is their high stability. In order to understand this property, we analyzed the interface non-covalent interactions and compared the properties of the Sm protein interfaces with those of a test set, Binding Interface Database (BID). The comparison revealed that the main differences between interfaces of Sm proteins and those of the BID set are the content of charged residues, hydrogen bonds, salt bridges, and conservation scores of interface residues. In Sm proteins, the interfaces have more hydrophobic and fewer charged residues than the surface, which is also the case for the BID test set and other proteins. However, in the interfaces, the content of charged residues in Sm proteins (26%) is substantially larger than that in the BID set (22%). Both interfaces of Sm proteins and of test set have a similar number of hydrophobic interactions per 100 angstrom(2). The interfaces of Sm proteins have substantially more hydrogen bonds than the interfaces in test set. The results show clearly that the interfaces of Sm proteins form more salt bridges compared with test set. On average, there are about 16 salt bridges per interface. The high conservation score of amino acids that are involved in non-covalent interactions in protein interfaces is an additional strong argument for their importance. The overriding conclusion from this study is that the non-covalent interactions in Sm protein interfaces considerably contribute to stability of higher order structures. (C) 2010 Elsevier Ltd. All rights reserved.
PB  - Academic Press Ltd- Elsevier Science Ltd, London
T2  - Journal of Theoretical Biology
T1  - Non-covalent interactions across subunit interfaces in Sm proteins
VL  - 271
IS  - 1
SP  - 18
EP  - 26
DO  - 10.1016/j.jtbi.2010.11.025
ER  - 
@article{
author = "Zarić, Božidarka L. and Jovanović, Vesna B. and Stojanović, Srđan Đ.",
year = "2011",
abstract = "The distinguishing property of Sm protein associations is their high stability. In order to understand this property, we analyzed the interface non-covalent interactions and compared the properties of the Sm protein interfaces with those of a test set, Binding Interface Database (BID). The comparison revealed that the main differences between interfaces of Sm proteins and those of the BID set are the content of charged residues, hydrogen bonds, salt bridges, and conservation scores of interface residues. In Sm proteins, the interfaces have more hydrophobic and fewer charged residues than the surface, which is also the case for the BID test set and other proteins. However, in the interfaces, the content of charged residues in Sm proteins (26%) is substantially larger than that in the BID set (22%). Both interfaces of Sm proteins and of test set have a similar number of hydrophobic interactions per 100 angstrom(2). The interfaces of Sm proteins have substantially more hydrogen bonds than the interfaces in test set. The results show clearly that the interfaces of Sm proteins form more salt bridges compared with test set. On average, there are about 16 salt bridges per interface. The high conservation score of amino acids that are involved in non-covalent interactions in protein interfaces is an additional strong argument for their importance. The overriding conclusion from this study is that the non-covalent interactions in Sm protein interfaces considerably contribute to stability of higher order structures. (C) 2010 Elsevier Ltd. All rights reserved.",
publisher = "Academic Press Ltd- Elsevier Science Ltd, London",
journal = "Journal of Theoretical Biology",
title = "Non-covalent interactions across subunit interfaces in Sm proteins",
volume = "271",
number = "1",
pages = "18-26",
doi = "10.1016/j.jtbi.2010.11.025"
}
Zarić, B. L., Jovanović, V. B.,& Stojanović, S. Đ.. (2011). Non-covalent interactions across subunit interfaces in Sm proteins. in Journal of Theoretical Biology
Academic Press Ltd- Elsevier Science Ltd, London., 271(1), 18-26.
https://doi.org/10.1016/j.jtbi.2010.11.025
Zarić BL, Jovanović VB, Stojanović SĐ. Non-covalent interactions across subunit interfaces in Sm proteins. in Journal of Theoretical Biology. 2011;271(1):18-26.
doi:10.1016/j.jtbi.2010.11.025 .
Zarić, Božidarka L., Jovanović, Vesna B., Stojanović, Srđan Đ., "Non-covalent interactions across subunit interfaces in Sm proteins" in Journal of Theoretical Biology, 271, no. 1 (2011):18-26,
https://doi.org/10.1016/j.jtbi.2010.11.025 . .
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What Are the Preferred Horizontal Displacements in Parallel Aromatic-Aromatic Interactions? Significant Interactions at Large Displacements

Ninković, Dragan; Janjić, Goran V.; Veljković, Dušan Ž.; Sredojević, Dušan N.; Zarić, Snežana D.

(Wiley-Blackwell, Malden, 2011)

TY  - JOUR
AU  - Ninković, Dragan
AU  - Janjić, Goran V.
AU  - Veljković, Dušan Ž.
AU  - Sredojević, Dušan N.
AU  - Zarić, Snežana D.
PY  - 2011
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1234
PB  - Wiley-Blackwell, Malden
T2  - Chemphyschem
T1  - What Are the Preferred Horizontal Displacements in Parallel Aromatic-Aromatic Interactions? Significant Interactions at Large Displacements
VL  - 12
IS  - 18
SP  - 3511
EP  - 3514
DO  - 10.1002/cphc.201100777
ER  - 
@article{
author = "Ninković, Dragan and Janjić, Goran V. and Veljković, Dušan Ž. and Sredojević, Dušan N. and Zarić, Snežana D.",
year = "2011",
publisher = "Wiley-Blackwell, Malden",
journal = "Chemphyschem",
title = "What Are the Preferred Horizontal Displacements in Parallel Aromatic-Aromatic Interactions? Significant Interactions at Large Displacements",
volume = "12",
number = "18",
pages = "3511-3514",
doi = "10.1002/cphc.201100777"
}
Ninković, D., Janjić, G. V., Veljković, D. Ž., Sredojević, D. N.,& Zarić, S. D.. (2011). What Are the Preferred Horizontal Displacements in Parallel Aromatic-Aromatic Interactions? Significant Interactions at Large Displacements. in Chemphyschem
Wiley-Blackwell, Malden., 12(18), 3511-3514.
https://doi.org/10.1002/cphc.201100777
Ninković D, Janjić GV, Veljković DŽ, Sredojević DN, Zarić SD. What Are the Preferred Horizontal Displacements in Parallel Aromatic-Aromatic Interactions? Significant Interactions at Large Displacements. in Chemphyschem. 2011;12(18):3511-3514.
doi:10.1002/cphc.201100777 .
Ninković, Dragan, Janjić, Goran V., Veljković, Dušan Ž., Sredojević, Dušan N., Zarić, Snežana D., "What Are the Preferred Horizontal Displacements in Parallel Aromatic-Aromatic Interactions? Significant Interactions at Large Displacements" in Chemphyschem, 12, no. 18 (2011):3511-3514,
https://doi.org/10.1002/cphc.201100777 . .
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Water/Aromatic Parallel Alignment Interactions. Significant Interactions at Large Horizontal Displacements

Janjić, Goran V.; Veljković, Dušan Ž.; Zarić, Snežana D.

(Amer Chemical Soc, Washington, 2011)

TY  - JOUR
AU  - Janjić, Goran V.
AU  - Veljković, Dušan Ž.
AU  - Zarić, Snežana D.
PY  - 2011
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1172
AB  - Analysis of crystal structures from the Cambridge Structural Database (CSD) and high level ab initio calculations reveals that the water/aromatic parallel alignment interactions; where the water molecule or one of its 0 H bonds is parallel to the aromatic ring plane, can be significantly strong at large horizontal displacements. We found out that the strongest energies of the interactions are calculated for the water position with the large horizontal displacements, out of the aromatic ring and out of the C-H bond region. For calculated systems, normal distances were decreasing with increasing the horizontal displacement, in accord with the data found in crystal structures. The calculated energies of the interactions are significant, up to Delta E-CCSD(T)(limit) = -10.25 kJ/mol (at a horizontal displacement of 2.6 angstrom), and comparable with the energy of the slipped-parallel benzene/benzene dimer. Both dispersion and electrostatic components of the interaction energy are important. The calculated interaction energies reveal that also at long horizontal displacements of 3.5 angstrom, interaction is substantially strong, up to Delta E-CCSD(T(limit) = -623 kJ/mol. The data show the existence of the water/aromatic parallel alignment interactions in crystal structures and indicate their importance for various systems.
PB  - Amer Chemical Soc, Washington
T2  - Crystal Growth and Design
T1  - Water/Aromatic Parallel Alignment Interactions. Significant Interactions at Large Horizontal Displacements
VL  - 11
IS  - 7
SP  - 2680
EP  - 2683
DO  - 10.1021/cg101208q
ER  - 
@article{
author = "Janjić, Goran V. and Veljković, Dušan Ž. and Zarić, Snežana D.",
year = "2011",
abstract = "Analysis of crystal structures from the Cambridge Structural Database (CSD) and high level ab initio calculations reveals that the water/aromatic parallel alignment interactions; where the water molecule or one of its 0 H bonds is parallel to the aromatic ring plane, can be significantly strong at large horizontal displacements. We found out that the strongest energies of the interactions are calculated for the water position with the large horizontal displacements, out of the aromatic ring and out of the C-H bond region. For calculated systems, normal distances were decreasing with increasing the horizontal displacement, in accord with the data found in crystal structures. The calculated energies of the interactions are significant, up to Delta E-CCSD(T)(limit) = -10.25 kJ/mol (at a horizontal displacement of 2.6 angstrom), and comparable with the energy of the slipped-parallel benzene/benzene dimer. Both dispersion and electrostatic components of the interaction energy are important. The calculated interaction energies reveal that also at long horizontal displacements of 3.5 angstrom, interaction is substantially strong, up to Delta E-CCSD(T(limit) = -623 kJ/mol. The data show the existence of the water/aromatic parallel alignment interactions in crystal structures and indicate their importance for various systems.",
publisher = "Amer Chemical Soc, Washington",
journal = "Crystal Growth and Design",
title = "Water/Aromatic Parallel Alignment Interactions. Significant Interactions at Large Horizontal Displacements",
volume = "11",
number = "7",
pages = "2680-2683",
doi = "10.1021/cg101208q"
}
Janjić, G. V., Veljković, D. Ž.,& Zarić, S. D.. (2011). Water/Aromatic Parallel Alignment Interactions. Significant Interactions at Large Horizontal Displacements. in Crystal Growth and Design
Amer Chemical Soc, Washington., 11(7), 2680-2683.
https://doi.org/10.1021/cg101208q
Janjić GV, Veljković DŽ, Zarić SD. Water/Aromatic Parallel Alignment Interactions. Significant Interactions at Large Horizontal Displacements. in Crystal Growth and Design. 2011;11(7):2680-2683.
doi:10.1021/cg101208q .
Janjić, Goran V., Veljković, Dušan Ž., Zarić, Snežana D., "Water/Aromatic Parallel Alignment Interactions. Significant Interactions at Large Horizontal Displacements" in Crystal Growth and Design, 11, no. 7 (2011):2680-2683,
https://doi.org/10.1021/cg101208q . .
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Geometries of stacking interactions between phenanthroline ligands in crystal structures of square-planar metal complexes

Janjić, Goran V.; Petrović, Predrag; Ninković, Dragan; Zarić, Snežana D.

(Springer, New York, 2011)

TY  - JOUR
AU  - Janjić, Goran V.
AU  - Petrović, Predrag
AU  - Ninković, Dragan
AU  - Zarić, Snežana D.
PY  - 2011
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1181
AB  - Stacking interactions of phenanthroline square-planar complexes in crystal structures were studied by analyzing data from the Cambridge Structural Database. In most of the crystal structures, two phenanthroline complexes were oriented "head to tail." Phenanthroline complexes show a wide range of overlap geometries in stacking interactions, while short metal-metal distances were not observed. Stacking chains with alternating overlaps were the predominant type of packing in the crystal structures.
PB  - Springer, New York
T2  - Journal of Molecular Modeling
T1  - Geometries of stacking interactions between phenanthroline ligands in crystal structures of square-planar metal complexes
VL  - 17
IS  - 8
SP  - 2083
EP  - 2092
DO  - 10.1007/s00894-010-0905-3
ER  - 
@article{
author = "Janjić, Goran V. and Petrović, Predrag and Ninković, Dragan and Zarić, Snežana D.",
year = "2011",
abstract = "Stacking interactions of phenanthroline square-planar complexes in crystal structures were studied by analyzing data from the Cambridge Structural Database. In most of the crystal structures, two phenanthroline complexes were oriented "head to tail." Phenanthroline complexes show a wide range of overlap geometries in stacking interactions, while short metal-metal distances were not observed. Stacking chains with alternating overlaps were the predominant type of packing in the crystal structures.",
publisher = "Springer, New York",
journal = "Journal of Molecular Modeling",
title = "Geometries of stacking interactions between phenanthroline ligands in crystal structures of square-planar metal complexes",
volume = "17",
number = "8",
pages = "2083-2092",
doi = "10.1007/s00894-010-0905-3"
}
Janjić, G. V., Petrović, P., Ninković, D.,& Zarić, S. D.. (2011). Geometries of stacking interactions between phenanthroline ligands in crystal structures of square-planar metal complexes. in Journal of Molecular Modeling
Springer, New York., 17(8), 2083-2092.
https://doi.org/10.1007/s00894-010-0905-3
Janjić GV, Petrović P, Ninković D, Zarić SD. Geometries of stacking interactions between phenanthroline ligands in crystal structures of square-planar metal complexes. in Journal of Molecular Modeling. 2011;17(8):2083-2092.
doi:10.1007/s00894-010-0905-3 .
Janjić, Goran V., Petrović, Predrag, Ninković, Dragan, Zarić, Snežana D., "Geometries of stacking interactions between phenanthroline ligands in crystal structures of square-planar metal complexes" in Journal of Molecular Modeling, 17, no. 8 (2011):2083-2092,
https://doi.org/10.1007/s00894-010-0905-3 . .
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Protein subunit interfaces: a statistical analysis of hot spots in Sm proteins

Stojanović, Srđan Đ.; Zarić, Božidarka L.; Zarić, Snežana D.

(Springer, New York, 2010)

TY  - JOUR
AU  - Stojanović, Srđan Đ.
AU  - Zarić, Božidarka L.
AU  - Zarić, Snežana D.
PY  - 2010
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1123
AB  - The distinguishing property of Sm protein associations is very high stability. In order to understand this property, we analyzed the interfaces and compared the properties of Sm protein interfaces with those of a test set, the Binding Interface Database (BID). The comparison revealed that the main differences between the interfaces of Sm proteins and those of the BID set are the content of charged residues, the coordination numbers of the residues, knowledge-based pair potentials, and the conservation scores of hot spots. In Sm proteins, the interfaces have more hydrophobic and fewer charged residues than the surfaces, which is also the case for the BID test set and other proteins. However, in the interfaces, the content of charged residues in Sm proteins (26%) is substantially larger than that in the BID set (22%). Hot spots are residues that make up a small fraction of the interfaces, but they contribute most of the binding energy. These residues are critical to protein-protein interactions. Analyses of knowledge-based pair potentials of hot spot and non-hot spot residues in Sm proteins show that they are significantly different; their mean values are 31.5 and 11.3, respectively. In the BID set, this difference is smaller; in this case, the mean values for hot spot and non-hot spot residues are 20.7 and 12.4, respectively. Hence, the pair potentials of hot spots differ significantly for the Sm and BID data sets. In the interfaces of Sm proteins, the amino acids are tightly packed, and the coordination numbers are larger in Sm proteins than in the BID set for both hot spots and non-hot spots. At the same time, the coordination numbers are higher for hot spots; the average coordination number of the hot spot residues in Sm proteins is 7.7, while it is 6.1 for the non-hot spot residues. The difference in the calculated average conservation score for hot spots and non-hot spots in Sm proteins is significantly larger than it is in the BID set. In Sm proteins, the average conservation score for the hot spots is 7.4. Hot spots are surrounded by residues that are moderately conserved (5.9). The average conservation score for the other interface residues is 5.6. The conservation scores in the BID set do not show a significant distinction between hot and non-hot spots: the mean values for hot and non-hot spot residues are 5.5 and 5.2, respectively. These data show that structurally conserved residues and hot spots are significantly correlated in Sm proteins.
PB  - Springer, New York
T2  - Journal of Molecular Modeling
T1  - Protein subunit interfaces: a statistical analysis of hot spots in Sm proteins
VL  - 16
IS  - 11
SP  - 1743
EP  - 1751
DO  - 10.1007/s00894-010-0787-4
ER  - 
@article{
author = "Stojanović, Srđan Đ. and Zarić, Božidarka L. and Zarić, Snežana D.",
year = "2010",
abstract = "The distinguishing property of Sm protein associations is very high stability. In order to understand this property, we analyzed the interfaces and compared the properties of Sm protein interfaces with those of a test set, the Binding Interface Database (BID). The comparison revealed that the main differences between the interfaces of Sm proteins and those of the BID set are the content of charged residues, the coordination numbers of the residues, knowledge-based pair potentials, and the conservation scores of hot spots. In Sm proteins, the interfaces have more hydrophobic and fewer charged residues than the surfaces, which is also the case for the BID test set and other proteins. However, in the interfaces, the content of charged residues in Sm proteins (26%) is substantially larger than that in the BID set (22%). Hot spots are residues that make up a small fraction of the interfaces, but they contribute most of the binding energy. These residues are critical to protein-protein interactions. Analyses of knowledge-based pair potentials of hot spot and non-hot spot residues in Sm proteins show that they are significantly different; their mean values are 31.5 and 11.3, respectively. In the BID set, this difference is smaller; in this case, the mean values for hot spot and non-hot spot residues are 20.7 and 12.4, respectively. Hence, the pair potentials of hot spots differ significantly for the Sm and BID data sets. In the interfaces of Sm proteins, the amino acids are tightly packed, and the coordination numbers are larger in Sm proteins than in the BID set for both hot spots and non-hot spots. At the same time, the coordination numbers are higher for hot spots; the average coordination number of the hot spot residues in Sm proteins is 7.7, while it is 6.1 for the non-hot spot residues. The difference in the calculated average conservation score for hot spots and non-hot spots in Sm proteins is significantly larger than it is in the BID set. In Sm proteins, the average conservation score for the hot spots is 7.4. Hot spots are surrounded by residues that are moderately conserved (5.9). The average conservation score for the other interface residues is 5.6. The conservation scores in the BID set do not show a significant distinction between hot and non-hot spots: the mean values for hot and non-hot spot residues are 5.5 and 5.2, respectively. These data show that structurally conserved residues and hot spots are significantly correlated in Sm proteins.",
publisher = "Springer, New York",
journal = "Journal of Molecular Modeling",
title = "Protein subunit interfaces: a statistical analysis of hot spots in Sm proteins",
volume = "16",
number = "11",
pages = "1743-1751",
doi = "10.1007/s00894-010-0787-4"
}
Stojanović, S. Đ., Zarić, B. L.,& Zarić, S. D.. (2010). Protein subunit interfaces: a statistical analysis of hot spots in Sm proteins. in Journal of Molecular Modeling
Springer, New York., 16(11), 1743-1751.
https://doi.org/10.1007/s00894-010-0787-4
Stojanović SĐ, Zarić BL, Zarić SD. Protein subunit interfaces: a statistical analysis of hot spots in Sm proteins. in Journal of Molecular Modeling. 2010;16(11):1743-1751.
doi:10.1007/s00894-010-0787-4 .
Stojanović, Srđan Đ., Zarić, Božidarka L., Zarić, Snežana D., "Protein subunit interfaces: a statistical analysis of hot spots in Sm proteins" in Journal of Molecular Modeling, 16, no. 11 (2010):1743-1751,
https://doi.org/10.1007/s00894-010-0787-4 . .
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Classification of stacking interaction geometries of terpyridyl square-planar complexes in crystal structures

Janjić, Goran V.; Andrić, Jelena M.; Kapor, Agnes; Bugarcic, Zivadin D.; Zarić, Snežana D.

(Royal Soc Chemistry, Cambridge, 2010)

TY  - JOUR
AU  - Janjić, Goran V.
AU  - Andrić, Jelena M.
AU  - Kapor, Agnes
AU  - Bugarcic, Zivadin D.
AU  - Zarić, Snežana D.
PY  - 2010
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1128
AB  - Stacking interactions of terpyridyl square-planar complexes in crystal structures were studied analyzing data from the Cambridge Structural Database. In most of the crystal structures, two terpyridyl complexes were oriented "head-to-tail" or "head-to-head", with "head-to-tail orientation" being most prevalent. The number of structures with other orientations was very small. Based on the analysis of interacting geometries, we classified overlaps of terpyridyl complexes into six types. The types were defined by values of several geometrical parameters and all interactions of the same type had very similar overlap patterns.
PB  - Royal Soc Chemistry, Cambridge
T2  - CrystEngComm
T1  - Classification of stacking interaction geometries of terpyridyl square-planar complexes in crystal structures
VL  - 12
IS  - 11
SP  - 3773
EP  - 3779
DO  - 10.1039/b917268h
ER  - 
@article{
author = "Janjić, Goran V. and Andrić, Jelena M. and Kapor, Agnes and Bugarcic, Zivadin D. and Zarić, Snežana D.",
year = "2010",
abstract = "Stacking interactions of terpyridyl square-planar complexes in crystal structures were studied analyzing data from the Cambridge Structural Database. In most of the crystal structures, two terpyridyl complexes were oriented "head-to-tail" or "head-to-head", with "head-to-tail orientation" being most prevalent. The number of structures with other orientations was very small. Based on the analysis of interacting geometries, we classified overlaps of terpyridyl complexes into six types. The types were defined by values of several geometrical parameters and all interactions of the same type had very similar overlap patterns.",
publisher = "Royal Soc Chemistry, Cambridge",
journal = "CrystEngComm",
title = "Classification of stacking interaction geometries of terpyridyl square-planar complexes in crystal structures",
volume = "12",
number = "11",
pages = "3773-3779",
doi = "10.1039/b917268h"
}
Janjić, G. V., Andrić, J. M., Kapor, A., Bugarcic, Z. D.,& Zarić, S. D.. (2010). Classification of stacking interaction geometries of terpyridyl square-planar complexes in crystal structures. in CrystEngComm
Royal Soc Chemistry, Cambridge., 12(11), 3773-3779.
https://doi.org/10.1039/b917268h
Janjić GV, Andrić JM, Kapor A, Bugarcic ZD, Zarić SD. Classification of stacking interaction geometries of terpyridyl square-planar complexes in crystal structures. in CrystEngComm. 2010;12(11):3773-3779.
doi:10.1039/b917268h .
Janjić, Goran V., Andrić, Jelena M., Kapor, Agnes, Bugarcic, Zivadin D., Zarić, Snežana D., "Classification of stacking interaction geometries of terpyridyl square-planar complexes in crystal structures" in CrystEngComm, 12, no. 11 (2010):3773-3779,
https://doi.org/10.1039/b917268h . .
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Evidence of Chelate-Chelate Stacking Interactions in Crystal Structures of Transition-Metal Complexes

Sredojević, Dušan N.; Tomić, Zoran D.; Zarić, Snežana D.

(Amer Chemical Soc, Washington, 2010)

TY  - JOUR
AU  - Sredojević, Dušan N.
AU  - Tomić, Zoran D.
AU  - Zarić, Snežana D.
PY  - 2010
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1062
AB  - Evidence of chelate-chelate stacking interactions was obtained by analyzing crystal structures of square-planar transition-metal complexes from the Cambridge Structural Database. The analysis showed that chelate-chelate stacking interactions occur in a large number of the crystal structures of neutral square-planar complexes. We found 955 structures with 1866 chelate-chelate stacking interactions. In most of the structures, dictate rings are fused with other chelate rings or with organic aromatic rings; however, chelate chelate stacking interactions of isolated rings were also found. In order to describe the geometry of the chelate-chelate stacking interactions, several geometric parameters were analyzed. In most of the interactions, two chelate rings are in parallel or antiparallel orientation. The normal distances are similar to the distances of stacking interactions observed in other systems, while the offset of two interacting chelate rings can be different from that observed in other systems.
PB  - Amer Chemical Soc, Washington
T2  - Crystal Growth and Design
T1  - Evidence of Chelate-Chelate Stacking Interactions in Crystal Structures of Transition-Metal Complexes
VL  - 10
IS  - 9
SP  - 3901
EP  - 3908
DO  - 10.1021/cg100312r
ER  - 
@article{
author = "Sredojević, Dušan N. and Tomić, Zoran D. and Zarić, Snežana D.",
year = "2010",
abstract = "Evidence of chelate-chelate stacking interactions was obtained by analyzing crystal structures of square-planar transition-metal complexes from the Cambridge Structural Database. The analysis showed that chelate-chelate stacking interactions occur in a large number of the crystal structures of neutral square-planar complexes. We found 955 structures with 1866 chelate-chelate stacking interactions. In most of the structures, dictate rings are fused with other chelate rings or with organic aromatic rings; however, chelate chelate stacking interactions of isolated rings were also found. In order to describe the geometry of the chelate-chelate stacking interactions, several geometric parameters were analyzed. In most of the interactions, two chelate rings are in parallel or antiparallel orientation. The normal distances are similar to the distances of stacking interactions observed in other systems, while the offset of two interacting chelate rings can be different from that observed in other systems.",
publisher = "Amer Chemical Soc, Washington",
journal = "Crystal Growth and Design",
title = "Evidence of Chelate-Chelate Stacking Interactions in Crystal Structures of Transition-Metal Complexes",
volume = "10",
number = "9",
pages = "3901-3908",
doi = "10.1021/cg100312r"
}
Sredojević, D. N., Tomić, Z. D.,& Zarić, S. D.. (2010). Evidence of Chelate-Chelate Stacking Interactions in Crystal Structures of Transition-Metal Complexes. in Crystal Growth and Design
Amer Chemical Soc, Washington., 10(9), 3901-3908.
https://doi.org/10.1021/cg100312r
Sredojević DN, Tomić ZD, Zarić SD. Evidence of Chelate-Chelate Stacking Interactions in Crystal Structures of Transition-Metal Complexes. in Crystal Growth and Design. 2010;10(9):3901-3908.
doi:10.1021/cg100312r .
Sredojević, Dušan N., Tomić, Zoran D., Zarić, Snežana D., "Evidence of Chelate-Chelate Stacking Interactions in Crystal Structures of Transition-Metal Complexes" in Crystal Growth and Design, 10, no. 9 (2010):3901-3908,
https://doi.org/10.1021/cg100312r . .
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Oxygen atom transfer catalysis: Ligand effects on the key reaction barrier in molybdenum (VI) dioxo systems

Keith, Jason M.; Tomić, Zoran D.; Zarić, Snežana D.; Hall, Michael B.

(Elsevier Science Bv, Amsterdam, 2010)

TY  - JOUR
AU  - Keith, Jason M.
AU  - Tomić, Zoran D.
AU  - Zarić, Snežana D.
AU  - Hall, Michael B.
PY  - 2010
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1087
AB  - Catalytic oxygen atom transfer (OAT), which frequently employs molybdenum oxo species, is an important reaction for both nature and industry. The mechanistic details of oxygen atom transfer from Tp(R)MoO(2)(XPh) to PMe(3) were investigated for R = 3-iPr and 3-Me and X=O and S by density functional theory (DFT) calculations of the enthalpies, free energy with solvent corrections, and natural bond orbital (NBO) analysis. The mechanism for both systems proceeds via rate-determining attack of PMe(3) to form a stable intermediate with a bound OPMe(3) ligand. From this intermediate the reaction proceeds through a substitution involving loss of OPMe(3) and coordination of a single CH(3)CN solvent molecule. The solvent corrected free energy barriers of the rate-determining OAT step for the O and S systems were found to be energetically more favorable for the S systems by 6.2 and 2.2 kcal/mol (for the R=3-iPr and 3-Me, respectively). This lower energy barrier is the result of better stabilization by the SPh ligand of the Mo(IV) products and the transition states, which are the unexpectedly later and more product-like. Additional examination of the NBO analysis emphasizes the role of the local acidity of the Mo and by extension the character of the ligands. The decreased electronegativity and softer character of the S atom result in an increased covalent character in the Mo-X bond which leads to the stabilization of a later (and lower energy) transition state and the corresponding product of the S system relative to O system. (C) 2010 Elsevier B.V. All rights reserved.
PB  - Elsevier Science Bv, Amsterdam
T2  - Journal of Molecular Catalysis. A: Chemical
T1  - Oxygen atom transfer catalysis: Ligand effects on the key reaction barrier in molybdenum (VI) dioxo systems
VL  - 324
IS  - 1-2
SP  - 15
EP  - 23
DO  - 10.1016/j.molcata.2010.02.027
ER  - 
@article{
author = "Keith, Jason M. and Tomić, Zoran D. and Zarić, Snežana D. and Hall, Michael B.",
year = "2010",
abstract = "Catalytic oxygen atom transfer (OAT), which frequently employs molybdenum oxo species, is an important reaction for both nature and industry. The mechanistic details of oxygen atom transfer from Tp(R)MoO(2)(XPh) to PMe(3) were investigated for R = 3-iPr and 3-Me and X=O and S by density functional theory (DFT) calculations of the enthalpies, free energy with solvent corrections, and natural bond orbital (NBO) analysis. The mechanism for both systems proceeds via rate-determining attack of PMe(3) to form a stable intermediate with a bound OPMe(3) ligand. From this intermediate the reaction proceeds through a substitution involving loss of OPMe(3) and coordination of a single CH(3)CN solvent molecule. The solvent corrected free energy barriers of the rate-determining OAT step for the O and S systems were found to be energetically more favorable for the S systems by 6.2 and 2.2 kcal/mol (for the R=3-iPr and 3-Me, respectively). This lower energy barrier is the result of better stabilization by the SPh ligand of the Mo(IV) products and the transition states, which are the unexpectedly later and more product-like. Additional examination of the NBO analysis emphasizes the role of the local acidity of the Mo and by extension the character of the ligands. The decreased electronegativity and softer character of the S atom result in an increased covalent character in the Mo-X bond which leads to the stabilization of a later (and lower energy) transition state and the corresponding product of the S system relative to O system. (C) 2010 Elsevier B.V. All rights reserved.",
publisher = "Elsevier Science Bv, Amsterdam",
journal = "Journal of Molecular Catalysis. A: Chemical",
title = "Oxygen atom transfer catalysis: Ligand effects on the key reaction barrier in molybdenum (VI) dioxo systems",
volume = "324",
number = "1-2",
pages = "15-23",
doi = "10.1016/j.molcata.2010.02.027"
}
Keith, J. M., Tomić, Z. D., Zarić, S. D.,& Hall, M. B.. (2010). Oxygen atom transfer catalysis: Ligand effects on the key reaction barrier in molybdenum (VI) dioxo systems. in Journal of Molecular Catalysis. A: Chemical
Elsevier Science Bv, Amsterdam., 324(1-2), 15-23.
https://doi.org/10.1016/j.molcata.2010.02.027
Keith JM, Tomić ZD, Zarić SD, Hall MB. Oxygen atom transfer catalysis: Ligand effects on the key reaction barrier in molybdenum (VI) dioxo systems. in Journal of Molecular Catalysis. A: Chemical. 2010;324(1-2):15-23.
doi:10.1016/j.molcata.2010.02.027 .
Keith, Jason M., Tomić, Zoran D., Zarić, Snežana D., Hall, Michael B., "Oxygen atom transfer catalysis: Ligand effects on the key reaction barrier in molybdenum (VI) dioxo systems" in Journal of Molecular Catalysis. A: Chemical, 324, no. 1-2 (2010):15-23,
https://doi.org/10.1016/j.molcata.2010.02.027 . .
11
10
10
11

Linear free energy relationships of half-wave reduction potentials of (E)-4-aryl-4-oxo-2-butenoic acids

Pastor, Ferenc; Drakulić, Branko J.

(Pergamon-Elsevier Science Ltd, Oxford, 2010)

TY  - JOUR
AU  - Pastor, Ferenc
AU  - Drakulić, Branko J.
PY  - 2010
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1050
AB  - Half-wave reduction potentials of a set of twelve (E)-4-aryl-4-oxo-2-butenoic acids obtained by direct current polarography in methanol are reported. E(1/2) is correlated with Hammett sigma values as well as with values of frontier molecular orbitals calculated at a semiempirical molecular orbital level. Constant potential electrolysis of a representative compound shows that the first polarographic wave corresponds to one-electron reduction. The isolation of the product proves reduction of the activated double bond. (C) 2009 Elsevier Ltd. All rights reserved.
PB  - Pergamon-Elsevier Science Ltd, Oxford
T2  - Tetrahedron Letters
T1  - Linear free energy relationships of half-wave reduction potentials of (E)-4-aryl-4-oxo-2-butenoic acids
VL  - 51
IS  - 4
SP  - 734
EP  - 738
DO  - 10.1016/j.tetlet.2009.11.129
ER  - 
@article{
author = "Pastor, Ferenc and Drakulić, Branko J.",
year = "2010",
abstract = "Half-wave reduction potentials of a set of twelve (E)-4-aryl-4-oxo-2-butenoic acids obtained by direct current polarography in methanol are reported. E(1/2) is correlated with Hammett sigma values as well as with values of frontier molecular orbitals calculated at a semiempirical molecular orbital level. Constant potential electrolysis of a representative compound shows that the first polarographic wave corresponds to one-electron reduction. The isolation of the product proves reduction of the activated double bond. (C) 2009 Elsevier Ltd. All rights reserved.",
publisher = "Pergamon-Elsevier Science Ltd, Oxford",
journal = "Tetrahedron Letters",
title = "Linear free energy relationships of half-wave reduction potentials of (E)-4-aryl-4-oxo-2-butenoic acids",
volume = "51",
number = "4",
pages = "734-738",
doi = "10.1016/j.tetlet.2009.11.129"
}
Pastor, F.,& Drakulić, B. J.. (2010). Linear free energy relationships of half-wave reduction potentials of (E)-4-aryl-4-oxo-2-butenoic acids. in Tetrahedron Letters
Pergamon-Elsevier Science Ltd, Oxford., 51(4), 734-738.
https://doi.org/10.1016/j.tetlet.2009.11.129
Pastor F, Drakulić BJ. Linear free energy relationships of half-wave reduction potentials of (E)-4-aryl-4-oxo-2-butenoic acids. in Tetrahedron Letters. 2010;51(4):734-738.
doi:10.1016/j.tetlet.2009.11.129 .
Pastor, Ferenc, Drakulić, Branko J., "Linear free energy relationships of half-wave reduction potentials of (E)-4-aryl-4-oxo-2-butenoic acids" in Tetrahedron Letters, 51, no. 4 (2010):734-738,
https://doi.org/10.1016/j.tetlet.2009.11.129 . .
3
3
3
3

STACKING INTERACTIONS BETWEEN PYRIDINE FRAGMENTS IN CRYSTAL STRUCTURES OF TERPYRIDYL COMPLEXES

Janjić, Goran V.; Petrović, Predrag; Ninković, Dragan; Veljković, Dušan Ž.; Kapor, Agnes; Zarić, Snežana D.

(Univ Babes-Bolyai, Cluj-Napoca, 2010)

TY  - JOUR
AU  - Janjić, Goran V.
AU  - Petrović, Predrag
AU  - Ninković, Dragan
AU  - Veljković, Dušan Ž.
AU  - Kapor, Agnes
AU  - Zarić, Snežana D.
PY  - 2010
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1159
AB  - In the crystal structures of terpyridyl complexes from the Cambridge Structural Database (CSD) stacking interaction between the pyridine fragments were studied. Square-planar complexes where the distance between the centers of two pyridine fragments was below 4.6 angstrom were retrieved from CSD. With this search 68 crystal structures with 167 interactions were found. In the interactions one, two or three pyridine fragments of one complex can be involved in overlapping with pyridine fragments of the other complex.
PB  - Univ Babes-Bolyai, Cluj-Napoca
T2  - Studia Universitatis Babes-Bolyai. Ser. Chemia
T1  - STACKING INTERACTIONS BETWEEN PYRIDINE FRAGMENTS IN CRYSTAL STRUCTURES OF TERPYRIDYL COMPLEXES
VL  - 55
IS  - 3
SP  - 165
EP  - 176
UR  - https://hdl.handle.net/21.15107/rcub_cherry_1159
ER  - 
@article{
author = "Janjić, Goran V. and Petrović, Predrag and Ninković, Dragan and Veljković, Dušan Ž. and Kapor, Agnes and Zarić, Snežana D.",
year = "2010",
abstract = "In the crystal structures of terpyridyl complexes from the Cambridge Structural Database (CSD) stacking interaction between the pyridine fragments were studied. Square-planar complexes where the distance between the centers of two pyridine fragments was below 4.6 angstrom were retrieved from CSD. With this search 68 crystal structures with 167 interactions were found. In the interactions one, two or three pyridine fragments of one complex can be involved in overlapping with pyridine fragments of the other complex.",
publisher = "Univ Babes-Bolyai, Cluj-Napoca",
journal = "Studia Universitatis Babes-Bolyai. Ser. Chemia",
title = "STACKING INTERACTIONS BETWEEN PYRIDINE FRAGMENTS IN CRYSTAL STRUCTURES OF TERPYRIDYL COMPLEXES",
volume = "55",
number = "3",
pages = "165-176",
url = "https://hdl.handle.net/21.15107/rcub_cherry_1159"
}
Janjić, G. V., Petrović, P., Ninković, D., Veljković, D. Ž., Kapor, A.,& Zarić, S. D.. (2010). STACKING INTERACTIONS BETWEEN PYRIDINE FRAGMENTS IN CRYSTAL STRUCTURES OF TERPYRIDYL COMPLEXES. in Studia Universitatis Babes-Bolyai. Ser. Chemia
Univ Babes-Bolyai, Cluj-Napoca., 55(3), 165-176.
https://hdl.handle.net/21.15107/rcub_cherry_1159
Janjić GV, Petrović P, Ninković D, Veljković DŽ, Kapor A, Zarić SD. STACKING INTERACTIONS BETWEEN PYRIDINE FRAGMENTS IN CRYSTAL STRUCTURES OF TERPYRIDYL COMPLEXES. in Studia Universitatis Babes-Bolyai. Ser. Chemia. 2010;55(3):165-176.
https://hdl.handle.net/21.15107/rcub_cherry_1159 .
Janjić, Goran V., Petrović, Predrag, Ninković, Dragan, Veljković, Dušan Ž., Kapor, Agnes, Zarić, Snežana D., "STACKING INTERACTIONS BETWEEN PYRIDINE FRAGMENTS IN CRYSTAL STRUCTURES OF TERPYRIDYL COMPLEXES" in Studia Universitatis Babes-Bolyai. Ser. Chemia, 55, no. 3 (2010):165-176,
https://hdl.handle.net/21.15107/rcub_cherry_1159 .
1
2

Understanding the factors affecting the activation of alkane by Cp ' Rh(CO)(2) (Cp ' = Cp or Cp*)

George, Michael W.; Hall, Michael B.; Jina, Omar S.; Portius, Peter; Sun, Xue-Zhong; Towrie, Michael; Wu, Hong; Yang, Xinzheng; Zarić, Snežana D.

(Natl Acad Sciences, Washington, 2010)

TY  - JOUR
AU  - George, Michael W.
AU  - Hall, Michael B.
AU  - Jina, Omar S.
AU  - Portius, Peter
AU  - Sun, Xue-Zhong
AU  - Towrie, Michael
AU  - Wu, Hong
AU  - Yang, Xinzheng
AU  - Zarić, Snežana D.
PY  - 2010
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/1136
AB  - Fast time-resolved infrared spectroscopic measurements have allowed precise determination of the rates of activation of alkanes by Cp'Rh(CO) (Cp' = eta(5)-C5H5 or eta(5)-C5Me5). We have monitored the kinetics of C-H activation in solution at room temperature and determined how the change in rate of oxidative cleavage varies from methane to decane. The lifetime of CpRh(CO)(alkane) shows a nearly linear behavior with respect to the length of the alkane chain, whereas the related Cp*Rh(CO)(alkane) has clear oscillatory behavior upon changing the alkane. Coupled cluster and density functional theory calculations on these complexes, transition states, and intermediates provide the insight into the mechanism and barriers in order to develop a kinetic simulation of the experimental results. The observed behavior is a subtle interplay between the rates of activation and migration. Unexpectedly, the calculations predict that the most rapid process in these Cp'Rh (CO)(alkane) systems is the 1,3-migration along the alkane chain. The linear behavior in the observed lifetime of CpRh(CO)(alkane) results from a mechanism in which the next most rapid process is the activation of primary C-H bonds (-CH3 groups), while the third key step in this system is 1,2-migration with a slightly slower rate. The oscillatory behavior in the lifetime of Cp*Rh(CO)(alkane) with respect to the alkane's chain length follows from subtle interplay between more rapid migrations and less rapid primary C-H activation, with respect to CpRh(CO)(alkane), especially when the CH3 group is near a gauche turn. This interplay results in the activation being controlled by the percentage of alkane conformers.
PB  - Natl Acad Sciences, Washington
T2  - Proceedings of the National Academy of Sciences of the United States
T1  - Understanding the factors affecting the activation of alkane by Cp ' Rh(CO)(2) (Cp ' = Cp or Cp*)
VL  - 107
IS  - 47
SP  - 20178
EP  - 20183
DO  - 10.1073/pnas.1001249107
ER  - 
@article{
author = "George, Michael W. and Hall, Michael B. and Jina, Omar S. and Portius, Peter and Sun, Xue-Zhong and Towrie, Michael and Wu, Hong and Yang, Xinzheng and Zarić, Snežana D.",
year = "2010",
abstract = "Fast time-resolved infrared spectroscopic measurements have allowed precise determination of the rates of activation of alkanes by Cp'Rh(CO) (Cp' = eta(5)-C5H5 or eta(5)-C5Me5). We have monitored the kinetics of C-H activation in solution at room temperature and determined how the change in rate of oxidative cleavage varies from methane to decane. The lifetime of CpRh(CO)(alkane) shows a nearly linear behavior with respect to the length of the alkane chain, whereas the related Cp*Rh(CO)(alkane) has clear oscillatory behavior upon changing the alkane. Coupled cluster and density functional theory calculations on these complexes, transition states, and intermediates provide the insight into the mechanism and barriers in order to develop a kinetic simulation of the experimental results. The observed behavior is a subtle interplay between the rates of activation and migration. Unexpectedly, the calculations predict that the most rapid process in these Cp'Rh (CO)(alkane) systems is the 1,3-migration along the alkane chain. The linear behavior in the observed lifetime of CpRh(CO)(alkane) results from a mechanism in which the next most rapid process is the activation of primary C-H bonds (-CH3 groups), while the third key step in this system is 1,2-migration with a slightly slower rate. The oscillatory behavior in the lifetime of Cp*Rh(CO)(alkane) with respect to the alkane's chain length follows from subtle interplay between more rapid migrations and less rapid primary C-H activation, with respect to CpRh(CO)(alkane), especially when the CH3 group is near a gauche turn. This interplay results in the activation being controlled by the percentage of alkane conformers.",
publisher = "Natl Acad Sciences, Washington",
journal = "Proceedings of the National Academy of Sciences of the United States",
title = "Understanding the factors affecting the activation of alkane by Cp ' Rh(CO)(2) (Cp ' = Cp or Cp*)",
volume = "107",
number = "47",
pages = "20178-20183",
doi = "10.1073/pnas.1001249107"
}
George, M. W., Hall, M. B., Jina, O. S., Portius, P., Sun, X., Towrie, M., Wu, H., Yang, X.,& Zarić, S. D.. (2010). Understanding the factors affecting the activation of alkane by Cp ' Rh(CO)(2) (Cp ' = Cp or Cp*). in Proceedings of the National Academy of Sciences of the United States
Natl Acad Sciences, Washington., 107(47), 20178-20183.
https://doi.org/10.1073/pnas.1001249107
George MW, Hall MB, Jina OS, Portius P, Sun X, Towrie M, Wu H, Yang X, Zarić SD. Understanding the factors affecting the activation of alkane by Cp ' Rh(CO)(2) (Cp ' = Cp or Cp*). in Proceedings of the National Academy of Sciences of the United States. 2010;107(47):20178-20183.
doi:10.1073/pnas.1001249107 .
George, Michael W., Hall, Michael B., Jina, Omar S., Portius, Peter, Sun, Xue-Zhong, Towrie, Michael, Wu, Hong, Yang, Xinzheng, Zarić, Snežana D., "Understanding the factors affecting the activation of alkane by Cp ' Rh(CO)(2) (Cp ' = Cp or Cp*)" in Proceedings of the National Academy of Sciences of the United States, 107, no. 47 (2010):20178-20183,
https://doi.org/10.1073/pnas.1001249107 . .
43
26
40
41

A Reexamination of Correlations of Amino Acids with Particular Secondary Structures

Malkov, Saga N.; Živković, Miodrag V.; Beljanski, Milos V.; Stojanović, Srđan Đ.; Zarić, Snežana D.

(Springer, New York, 2009)

TY  - JOUR
AU  - Malkov, Saga N.
AU  - Živković, Miodrag V.
AU  - Beljanski, Milos V.
AU  - Stojanović, Srđan Đ.
AU  - Zarić, Snežana D.
PY  - 2009
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/991
AB  - Using the data from Protein Data Bank the correlations of primary and secondary structures of proteins were analyzed. The correlation values of the amino acids and the eight secondary structure types were calculated, where the position of the amino acid and the position in sequence with the particular secondary structure differ at most 25. The diagrams describing these results indicate that correlations are significant at distances between -9 and 10. The results show that the substituents on C beta or C gamma atoms of amino acid play major role in their preference for particular secondary structure at the same position in the sequence, while the polarity of amino acid has significant influence on alpha-helices and strands at some distance in the sequence. The diagrams corresponding to polar amino acids are noticeably asymmetric. The diagrams point out the exchangeability of residues in the proteins; the amino acids with similar diagrams have similar local folding requirements.
PB  - Springer, New York
T2  - Protein Journal
T1  - A Reexamination of Correlations of Amino Acids with Particular Secondary Structures
VL  - 28
IS  - 2
SP  - 74
EP  - 86
DO  - 10.1007/s10930-009-9166-3
ER  - 
@article{
author = "Malkov, Saga N. and Živković, Miodrag V. and Beljanski, Milos V. and Stojanović, Srđan Đ. and Zarić, Snežana D.",
year = "2009",
abstract = "Using the data from Protein Data Bank the correlations of primary and secondary structures of proteins were analyzed. The correlation values of the amino acids and the eight secondary structure types were calculated, where the position of the amino acid and the position in sequence with the particular secondary structure differ at most 25. The diagrams describing these results indicate that correlations are significant at distances between -9 and 10. The results show that the substituents on C beta or C gamma atoms of amino acid play major role in their preference for particular secondary structure at the same position in the sequence, while the polarity of amino acid has significant influence on alpha-helices and strands at some distance in the sequence. The diagrams corresponding to polar amino acids are noticeably asymmetric. The diagrams point out the exchangeability of residues in the proteins; the amino acids with similar diagrams have similar local folding requirements.",
publisher = "Springer, New York",
journal = "Protein Journal",
title = "A Reexamination of Correlations of Amino Acids with Particular Secondary Structures",
volume = "28",
number = "2",
pages = "74-86",
doi = "10.1007/s10930-009-9166-3"
}
Malkov, S. N., Živković, M. V., Beljanski, M. V., Stojanović, S. Đ.,& Zarić, S. D.. (2009). A Reexamination of Correlations of Amino Acids with Particular Secondary Structures. in Protein Journal
Springer, New York., 28(2), 74-86.
https://doi.org/10.1007/s10930-009-9166-3
Malkov SN, Živković MV, Beljanski MV, Stojanović SĐ, Zarić SD. A Reexamination of Correlations of Amino Acids with Particular Secondary Structures. in Protein Journal. 2009;28(2):74-86.
doi:10.1007/s10930-009-9166-3 .
Malkov, Saga N., Živković, Miodrag V., Beljanski, Milos V., Stojanović, Srđan Đ., Zarić, Snežana D., "A Reexamination of Correlations of Amino Acids with Particular Secondary Structures" in Protein Journal, 28, no. 2 (2009):74-86,
https://doi.org/10.1007/s10930-009-9166-3 . .
12
8
11
11

Intramolecular MLOH/pi and MLNH/pi interactions in crystal structures of metal complexes

Janjić, Goran V.; Milčić, Miloš K.; Zarić, Snežana D.

(De Gruyter Open Ltd, Warsaw, 2009)

TY  - JOUR
AU  - Janjić, Goran V.
AU  - Milčić, Miloš K.
AU  - Zarić, Snežana D.
PY  - 2009
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/617
AB  - Intramolecular metal-ligand OH/pi (MLOH/pi) and metal-ligand NH/pi (MLNH/pi) interactions in transition metal complexes between aqua or ammine ligand and ligand containing a C6-aromatic ring were investigated in crystal structures deposited in the Cambridge Structural Database (CSD). These intramolecular interactions appear in 38 structures with aqua ligand as the hydrogen atom donor and in 10 structures with ammine ligand as the hydrogen atom donor. Among all these complexes only one is negatively charged, 14 are positively charged and 33 are neutral indicating that the overall charge of the molecule has an influence on the XH/pi (X = O or N) interactions. Energy estimated by DFT calculations is approximately 19 kJ mol(-1) for the MLOH/pi interactions and approximately 15 kJ mol(-1) for the MLNH/pi interactions.
PB  - De Gruyter Open Ltd, Warsaw
T2  - Chemical Papers = Chemicke Zvesti
T1  - Intramolecular MLOH/pi and MLNH/pi interactions in crystal structures of metal complexes
VL  - 63
IS  - 3
SP  - 298
EP  - 305
DO  - 10.2478/s11696-009-0020-z
ER  - 
@article{
author = "Janjić, Goran V. and Milčić, Miloš K. and Zarić, Snežana D.",
year = "2009",
abstract = "Intramolecular metal-ligand OH/pi (MLOH/pi) and metal-ligand NH/pi (MLNH/pi) interactions in transition metal complexes between aqua or ammine ligand and ligand containing a C6-aromatic ring were investigated in crystal structures deposited in the Cambridge Structural Database (CSD). These intramolecular interactions appear in 38 structures with aqua ligand as the hydrogen atom donor and in 10 structures with ammine ligand as the hydrogen atom donor. Among all these complexes only one is negatively charged, 14 are positively charged and 33 are neutral indicating that the overall charge of the molecule has an influence on the XH/pi (X = O or N) interactions. Energy estimated by DFT calculations is approximately 19 kJ mol(-1) for the MLOH/pi interactions and approximately 15 kJ mol(-1) for the MLNH/pi interactions.",
publisher = "De Gruyter Open Ltd, Warsaw",
journal = "Chemical Papers = Chemicke Zvesti",
title = "Intramolecular MLOH/pi and MLNH/pi interactions in crystal structures of metal complexes",
volume = "63",
number = "3",
pages = "298-305",
doi = "10.2478/s11696-009-0020-z"
}
Janjić, G. V., Milčić, M. K.,& Zarić, S. D.. (2009). Intramolecular MLOH/pi and MLNH/pi interactions in crystal structures of metal complexes. in Chemical Papers = Chemicke Zvesti
De Gruyter Open Ltd, Warsaw., 63(3), 298-305.
https://doi.org/10.2478/s11696-009-0020-z
Janjić GV, Milčić MK, Zarić SD. Intramolecular MLOH/pi and MLNH/pi interactions in crystal structures of metal complexes. in Chemical Papers = Chemicke Zvesti. 2009;63(3):298-305.
doi:10.2478/s11696-009-0020-z .
Janjić, Goran V., Milčić, Miloš K., Zarić, Snežana D., "Intramolecular MLOH/pi and MLNH/pi interactions in crystal structures of metal complexes" in Chemical Papers = Chemicke Zvesti, 63, no. 3 (2009):298-305,
https://doi.org/10.2478/s11696-009-0020-z . .
6
7
9
3

Kinetic method for the determination of traces of thyroxine by its catalytic effect on the Mn(III) metaphosphate-As (III) reaction

Pastor, Ferenc; Milovanović, Gordana A.; Todorović, Marija B.

(Elsevier Science Bv, Amsterdam, 2008)

TY  - JOUR
AU  - Pastor, Ferenc
AU  - Milovanović, Gordana A.
AU  - Todorović, Marija B.
PY  - 2008
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/918
AB  - A new, highly sensitive and simple kinetic method for the determination of thyroxine was proposed. The method was based on the catalytic effect of thyroxine on the oxidation of As(III) by Mn(III) metaphosphate. The kinetics of the reaction was studied in the presence of orthophosphoric acid. The reaction rate was followed spectrophotometrically at 516 nm. It was established that orthophosphoric acid increased the reaction rate and that the extent of the non-catalytic reaction was extremely small. A kinetic equation was postulated and the apparent rate constant was calculated. The dependence of the reaction rate on temperature was investigated and the energy of activation and other kinetic parameters were determined. Thyroxine was determined under the optimal experimental conditions in the range 7.0 x 10(-9) to 3.0 x 10(-8) mol L-1 with a relative standard deviation up to 6.7% and a detection limit of 2.7 x 10(-9) mol L-1. In the presence of 0.08 mol L-1 chloride, the detection limit decreased to 6.6 x 10(-10) mol L-1. The proposed method was applied for the determination of thyroxine in tablets. The accuracy of the method was evaluated by comparison with the HPLC method. (C) 2007 Elsevier B.V. All rights reserved.
PB  - Elsevier Science Bv, Amsterdam
T2  - Talanta
T1  - Kinetic method for the determination of traces of thyroxine by its catalytic effect on the Mn(III) metaphosphate-As (III) reaction
VL  - 74
IS  - 5
SP  - 1556
EP  - 1561
DO  - 10.1016/j.talanta.2007.09.033
ER  - 
@article{
author = "Pastor, Ferenc and Milovanović, Gordana A. and Todorović, Marija B.",
year = "2008",
abstract = "A new, highly sensitive and simple kinetic method for the determination of thyroxine was proposed. The method was based on the catalytic effect of thyroxine on the oxidation of As(III) by Mn(III) metaphosphate. The kinetics of the reaction was studied in the presence of orthophosphoric acid. The reaction rate was followed spectrophotometrically at 516 nm. It was established that orthophosphoric acid increased the reaction rate and that the extent of the non-catalytic reaction was extremely small. A kinetic equation was postulated and the apparent rate constant was calculated. The dependence of the reaction rate on temperature was investigated and the energy of activation and other kinetic parameters were determined. Thyroxine was determined under the optimal experimental conditions in the range 7.0 x 10(-9) to 3.0 x 10(-8) mol L-1 with a relative standard deviation up to 6.7% and a detection limit of 2.7 x 10(-9) mol L-1. In the presence of 0.08 mol L-1 chloride, the detection limit decreased to 6.6 x 10(-10) mol L-1. The proposed method was applied for the determination of thyroxine in tablets. The accuracy of the method was evaluated by comparison with the HPLC method. (C) 2007 Elsevier B.V. All rights reserved.",
publisher = "Elsevier Science Bv, Amsterdam",
journal = "Talanta",
title = "Kinetic method for the determination of traces of thyroxine by its catalytic effect on the Mn(III) metaphosphate-As (III) reaction",
volume = "74",
number = "5",
pages = "1556-1561",
doi = "10.1016/j.talanta.2007.09.033"
}
Pastor, F., Milovanović, G. A.,& Todorović, M. B.. (2008). Kinetic method for the determination of traces of thyroxine by its catalytic effect on the Mn(III) metaphosphate-As (III) reaction. in Talanta
Elsevier Science Bv, Amsterdam., 74(5), 1556-1561.
https://doi.org/10.1016/j.talanta.2007.09.033
Pastor F, Milovanović GA, Todorović MB. Kinetic method for the determination of traces of thyroxine by its catalytic effect on the Mn(III) metaphosphate-As (III) reaction. in Talanta. 2008;74(5):1556-1561.
doi:10.1016/j.talanta.2007.09.033 .
Pastor, Ferenc, Milovanović, Gordana A., Todorović, Marija B., "Kinetic method for the determination of traces of thyroxine by its catalytic effect on the Mn(III) metaphosphate-As (III) reaction" in Talanta, 74, no. 5 (2008):1556-1561,
https://doi.org/10.1016/j.talanta.2007.09.033 . .
3
4
4
3

Inorganic-inorganic nanocomposite: Surface and conductive properties

Sredic, Svjetlana; Davidovic, Milorad; Spasjevic-de-Bire, Anne; Mioč, Ubavka B.; Todorović, Marija B.; Šegan, Dejan M.; Jovanović, Dušan; Polizos, George; Pissis, Polycarpos

(Pergamon-Elsevier Science Ltd, Oxford, 2008)

TY  - JOUR
AU  - Sredic, Svjetlana
AU  - Davidovic, Milorad
AU  - Spasjevic-de-Bire, Anne
AU  - Mioč, Ubavka B.
AU  - Todorović, Marija B.
AU  - Šegan, Dejan M.
AU  - Jovanović, Dušan
AU  - Polizos, George
AU  - Pissis, Polycarpos
PY  - 2008
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/968
AB  - Our previous experiences with incorporation of polyoxometalates (POMs) ill different substrates have been very successful, because new nanocomposites with better conductive, catalytical and biochemical characteristics have been obtained. The results of intercalation of different mass% of ammonium decavanadate (ADV) in Al-pillared interlayered clays (Al-PILCs) are presented. The Al-PILCs were prepared using natural raw material, bentonite, containing a high percentage of montmorillonite (MM). Synthesis of ADV has been described in a previous paper. The structure of ADV hexahydrate was determined at low temperature, 100 K. A kappa refinement was performed to estimate the atomic charges. A sol-gel procedure was applied to obtain Al-PILCs composite intercalated with ADV hexahydrate (from 2 to 5 mass% of ADV). Structure and morphological properties of the new material, a nanocomposite of Al-PILCs-ADV, were investigated by X-ray powder diffraction (XRPD) and atomic force microscopy (AFM). To understand better how ADV is incorporated in the MM substrate, specific surface areas, pore structures and pore distributions were determined. Electrical and dielectric properties of the new materials were investigated by thermally stimulated depolarization currents (TSDCs) and broadband dielectric relaxation spectroscopy (DRS). The electrical conductivity of the nanocomposite was found to increase, in relation to MM, by intercalating with a small amount of ADV. (C) 2008 Published by Elsevier Ltd.
PB  - Pergamon-Elsevier Science Ltd, Oxford
T2  - Journal of Physics and Chemistry of Solids
T1  - Inorganic-inorganic nanocomposite: Surface and conductive properties
VL  - 69
IS  - 8
SP  - 1883
EP  - 1890
DO  - 10.1016/j.jpcs.2007.12.023
ER  - 
@article{
author = "Sredic, Svjetlana and Davidovic, Milorad and Spasjevic-de-Bire, Anne and Mioč, Ubavka B. and Todorović, Marija B. and Šegan, Dejan M. and Jovanović, Dušan and Polizos, George and Pissis, Polycarpos",
year = "2008",
abstract = "Our previous experiences with incorporation of polyoxometalates (POMs) ill different substrates have been very successful, because new nanocomposites with better conductive, catalytical and biochemical characteristics have been obtained. The results of intercalation of different mass% of ammonium decavanadate (ADV) in Al-pillared interlayered clays (Al-PILCs) are presented. The Al-PILCs were prepared using natural raw material, bentonite, containing a high percentage of montmorillonite (MM). Synthesis of ADV has been described in a previous paper. The structure of ADV hexahydrate was determined at low temperature, 100 K. A kappa refinement was performed to estimate the atomic charges. A sol-gel procedure was applied to obtain Al-PILCs composite intercalated with ADV hexahydrate (from 2 to 5 mass% of ADV). Structure and morphological properties of the new material, a nanocomposite of Al-PILCs-ADV, were investigated by X-ray powder diffraction (XRPD) and atomic force microscopy (AFM). To understand better how ADV is incorporated in the MM substrate, specific surface areas, pore structures and pore distributions were determined. Electrical and dielectric properties of the new materials were investigated by thermally stimulated depolarization currents (TSDCs) and broadband dielectric relaxation spectroscopy (DRS). The electrical conductivity of the nanocomposite was found to increase, in relation to MM, by intercalating with a small amount of ADV. (C) 2008 Published by Elsevier Ltd.",
publisher = "Pergamon-Elsevier Science Ltd, Oxford",
journal = "Journal of Physics and Chemistry of Solids",
title = "Inorganic-inorganic nanocomposite: Surface and conductive properties",
volume = "69",
number = "8",
pages = "1883-1890",
doi = "10.1016/j.jpcs.2007.12.023"
}
Sredic, S., Davidovic, M., Spasjevic-de-Bire, A., Mioč, U. B., Todorović, M. B., Šegan, D. M., Jovanović, D., Polizos, G.,& Pissis, P.. (2008). Inorganic-inorganic nanocomposite: Surface and conductive properties. in Journal of Physics and Chemistry of Solids
Pergamon-Elsevier Science Ltd, Oxford., 69(8), 1883-1890.
https://doi.org/10.1016/j.jpcs.2007.12.023
Sredic S, Davidovic M, Spasjevic-de-Bire A, Mioč UB, Todorović MB, Šegan DM, Jovanović D, Polizos G, Pissis P. Inorganic-inorganic nanocomposite: Surface and conductive properties. in Journal of Physics and Chemistry of Solids. 2008;69(8):1883-1890.
doi:10.1016/j.jpcs.2007.12.023 .
Sredic, Svjetlana, Davidovic, Milorad, Spasjevic-de-Bire, Anne, Mioč, Ubavka B., Todorović, Marija B., Šegan, Dejan M., Jovanović, Dušan, Polizos, George, Pissis, Polycarpos, "Inorganic-inorganic nanocomposite: Surface and conductive properties" in Journal of Physics and Chemistry of Solids, 69, no. 8 (2008):1883-1890,
https://doi.org/10.1016/j.jpcs.2007.12.023 . .
5
7
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5

Parallel alignment of water and aryl rings-crystallographic and theoretical evidence for the interaction

Ostojić, Bojana D.; Janjić, Goran V.; Zarić, Snežana D.

(Royal Soc Chemistry, Cambridge, 2008)

TY  - JOUR
AU  - Ostojić, Bojana D.
AU  - Janjić, Goran V.
AU  - Zarić, Snežana D.
PY  - 2008
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/590
AB  - Analysis of crystal structures from the Cambridge Structural Database (CSD) that involve close contact between water and aryl rings revealed the existance of conformations where the water molecule or one of its O-H bonds is parallel to the aromatic ring plane at distances typical for stacking interactions; attractive interaction energies obtained from ab initio calculations performed on model systems are significant (e. g. Delta(ECCSD(T)) = -1.60 kcal mol(-1)) and consistent with the observed structures.
PB  - Royal Soc Chemistry, Cambridge
T2  - Chemical Communications
T1  - Parallel alignment of water and aryl rings-crystallographic and theoretical evidence for the interaction
IS  - 48
SP  - 6546
EP  - 6548
DO  - 10.1039/b812925h
ER  - 
@article{
author = "Ostojić, Bojana D. and Janjić, Goran V. and Zarić, Snežana D.",
year = "2008",
abstract = "Analysis of crystal structures from the Cambridge Structural Database (CSD) that involve close contact between water and aryl rings revealed the existance of conformations where the water molecule or one of its O-H bonds is parallel to the aromatic ring plane at distances typical for stacking interactions; attractive interaction energies obtained from ab initio calculations performed on model systems are significant (e. g. Delta(ECCSD(T)) = -1.60 kcal mol(-1)) and consistent with the observed structures.",
publisher = "Royal Soc Chemistry, Cambridge",
journal = "Chemical Communications",
title = "Parallel alignment of water and aryl rings-crystallographic and theoretical evidence for the interaction",
number = "48",
pages = "6546-6548",
doi = "10.1039/b812925h"
}
Ostojić, B. D., Janjić, G. V.,& Zarić, S. D.. (2008). Parallel alignment of water and aryl rings-crystallographic and theoretical evidence for the interaction. in Chemical Communications
Royal Soc Chemistry, Cambridge.(48), 6546-6548.
https://doi.org/10.1039/b812925h
Ostojić BD, Janjić GV, Zarić SD. Parallel alignment of water and aryl rings-crystallographic and theoretical evidence for the interaction. in Chemical Communications. 2008;(48):6546-6548.
doi:10.1039/b812925h .
Ostojić, Bojana D., Janjić, Goran V., Zarić, Snežana D., "Parallel alignment of water and aryl rings-crystallographic and theoretical evidence for the interaction" in Chemical Communications, no. 48 (2008):6546-6548,
https://doi.org/10.1039/b812925h . .
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45

Probing the mechanism of carbon-hydrogen bond activation by photochemically generated hydridotris(pyrazolyl)borato carbonyl rhodium complexes: New experimental and theoretical investigations

Blake, Alexander J.; George, Michael W.; Hall, Michael B.; McMaster, Jonathan; Portius, Peter; Sun, Xue Z.; Towrie, Michael; Webster, Charles Edwin; Wilson, Claire; Zarić, Snežana D.

(Amer Chemical Soc, Washington, 2008)

TY  - JOUR
AU  - Blake, Alexander J.
AU  - George, Michael W.
AU  - Hall, Michael B.
AU  - McMaster, Jonathan
AU  - Portius, Peter
AU  - Sun, Xue Z.
AU  - Towrie, Michael
AU  - Webster, Charles Edwin
AU  - Wilson, Claire
AU  - Zarić, Snežana D.
PY  - 2008
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/910
AB  - Fast time-resolved infrared (TRIR) experiments and density functional (DFT) calculations have been used to elucidate the complete reaction mechanism between alkanes and photolytically activated hydridotris(pyrazoly-1-yl)boratodicarbonylrhodium. TRIR spectra were obtained after photolysis of Rh(TP4-tBu-3,5-Me)(CO)(2) in n-heptane, n-decane, and cyclohexane and of Rh(Tp(3,5-Me))(CO)(2) in n-heptane and cyclohexane. Initial photolysis produces a coordinatively unsaturated, 16-electron monocarbonyl species that vibrationally relaxes to an intermediate with v(CO) of 1971 cm(-1) in n-heptane solution (species A). DFT calculations on Rh(Tp(3,5-Me))(CO)-RH (RH = C2H6, C6H12) suggest that A is the triplet state of a five-coordinate, square-pyramidal Rh(k(3) -Tp(3,5-Me))(CO)-RH, in which the alkane is weakly bound. Within the first 2 ns, a new transient grew in at 1993 cm(-1) (species B). The calculations show that the observed species B is the singlet state of a four-coordinate Rh(K-2-Tp(3,5-Me))(CO)(RH), in which the alkane is strongly bound and one pyrazolyl ring is rotated, decoordinating one N. The transient due to B grew at the same rate as A partially decayed. However, A did not decay completely, but persisted in equilibrium with B throughout the time up to 2500 ps. The v(CO) bands due to A and B decayed at the same rate as a band at 2026 cm(-1) grew in (tau ca. 29 ns, n-heptane). The latter band can be readily assigned to the final alkyl hydride products, Rh(K-3-Tp(4-tBu-3,5-Me))(CO)R(H) and Rh(K-3-Tp(3,5-Me))(CO)R(H) (species D). The experimental data do not allow the elucidation of which of the two alkane complexes, A or B, is C-H activating, or whether both of the complexes react to form the final product. The calculations suggest that a third intermediate (species Q is the C-H activating species, that is, the final product D is formed from C and not directly from either A or B. Species C is nominally a five-coordinate, square-pyramidal Rh(K-21/2-T-p3,T-5-Me)(CO)(RH) complex with a strongly bound alkane and one pyrazolyl partially decoordinated, but occupying the apical position of the square pyramid. Intermediate C is unobserved, as the calculations predict it possesses the same CO stretching frequency as the parent dicarbonyl. The unobserved species is predicted to lie on the reaction path between A and B and to be in rapid equilibrium with the four-coordinate species B.
PB  - Amer Chemical Soc, Washington
T2  - Organometallics
T1  - Probing the mechanism of carbon-hydrogen bond activation by photochemically generated hydridotris(pyrazolyl)borato carbonyl rhodium complexes: New experimental and theoretical investigations
VL  - 27
IS  - 2
SP  - 189
EP  - 201
DO  - 10.1021/om7008217
ER  - 
@article{
author = "Blake, Alexander J. and George, Michael W. and Hall, Michael B. and McMaster, Jonathan and Portius, Peter and Sun, Xue Z. and Towrie, Michael and Webster, Charles Edwin and Wilson, Claire and Zarić, Snežana D.",
year = "2008",
abstract = "Fast time-resolved infrared (TRIR) experiments and density functional (DFT) calculations have been used to elucidate the complete reaction mechanism between alkanes and photolytically activated hydridotris(pyrazoly-1-yl)boratodicarbonylrhodium. TRIR spectra were obtained after photolysis of Rh(TP4-tBu-3,5-Me)(CO)(2) in n-heptane, n-decane, and cyclohexane and of Rh(Tp(3,5-Me))(CO)(2) in n-heptane and cyclohexane. Initial photolysis produces a coordinatively unsaturated, 16-electron monocarbonyl species that vibrationally relaxes to an intermediate with v(CO) of 1971 cm(-1) in n-heptane solution (species A). DFT calculations on Rh(Tp(3,5-Me))(CO)-RH (RH = C2H6, C6H12) suggest that A is the triplet state of a five-coordinate, square-pyramidal Rh(k(3) -Tp(3,5-Me))(CO)-RH, in which the alkane is weakly bound. Within the first 2 ns, a new transient grew in at 1993 cm(-1) (species B). The calculations show that the observed species B is the singlet state of a four-coordinate Rh(K-2-Tp(3,5-Me))(CO)(RH), in which the alkane is strongly bound and one pyrazolyl ring is rotated, decoordinating one N. The transient due to B grew at the same rate as A partially decayed. However, A did not decay completely, but persisted in equilibrium with B throughout the time up to 2500 ps. The v(CO) bands due to A and B decayed at the same rate as a band at 2026 cm(-1) grew in (tau ca. 29 ns, n-heptane). The latter band can be readily assigned to the final alkyl hydride products, Rh(K-3-Tp(4-tBu-3,5-Me))(CO)R(H) and Rh(K-3-Tp(3,5-Me))(CO)R(H) (species D). The experimental data do not allow the elucidation of which of the two alkane complexes, A or B, is C-H activating, or whether both of the complexes react to form the final product. The calculations suggest that a third intermediate (species Q is the C-H activating species, that is, the final product D is formed from C and not directly from either A or B. Species C is nominally a five-coordinate, square-pyramidal Rh(K-21/2-T-p3,T-5-Me)(CO)(RH) complex with a strongly bound alkane and one pyrazolyl partially decoordinated, but occupying the apical position of the square pyramid. Intermediate C is unobserved, as the calculations predict it possesses the same CO stretching frequency as the parent dicarbonyl. The unobserved species is predicted to lie on the reaction path between A and B and to be in rapid equilibrium with the four-coordinate species B.",
publisher = "Amer Chemical Soc, Washington",
journal = "Organometallics",
title = "Probing the mechanism of carbon-hydrogen bond activation by photochemically generated hydridotris(pyrazolyl)borato carbonyl rhodium complexes: New experimental and theoretical investigations",
volume = "27",
number = "2",
pages = "189-201",
doi = "10.1021/om7008217"
}
Blake, A. J., George, M. W., Hall, M. B., McMaster, J., Portius, P., Sun, X. Z., Towrie, M., Webster, C. E., Wilson, C.,& Zarić, S. D.. (2008). Probing the mechanism of carbon-hydrogen bond activation by photochemically generated hydridotris(pyrazolyl)borato carbonyl rhodium complexes: New experimental and theoretical investigations. in Organometallics
Amer Chemical Soc, Washington., 27(2), 189-201.
https://doi.org/10.1021/om7008217
Blake AJ, George MW, Hall MB, McMaster J, Portius P, Sun XZ, Towrie M, Webster CE, Wilson C, Zarić SD. Probing the mechanism of carbon-hydrogen bond activation by photochemically generated hydridotris(pyrazolyl)borato carbonyl rhodium complexes: New experimental and theoretical investigations. in Organometallics. 2008;27(2):189-201.
doi:10.1021/om7008217 .
Blake, Alexander J., George, Michael W., Hall, Michael B., McMaster, Jonathan, Portius, Peter, Sun, Xue Z., Towrie, Michael, Webster, Charles Edwin, Wilson, Claire, Zarić, Snežana D., "Probing the mechanism of carbon-hydrogen bond activation by photochemically generated hydridotris(pyrazolyl)borato carbonyl rhodium complexes: New experimental and theoretical investigations" in Organometallics, 27, no. 2 (2008):189-201,
https://doi.org/10.1021/om7008217 . .
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27

A reexamination of the propensities of amino acids towards a particular secondary structure: classification of amino acids based on their chemical structure

Malkov, Sasa N.; Živković, Miodrag V.; Beljanski, Milos V.; Hall, Michael B.; Zarić, Snežana D.

(Springer, New York, 2008)

TY  - JOUR
AU  - Malkov, Sasa N.
AU  - Živković, Miodrag V.
AU  - Beljanski, Milos V.
AU  - Hall, Michael B.
AU  - Zarić, Snežana D.
PY  - 2008
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/953
AB  - The correlation between the primary and secondary structures of proteins was analysed using a large data set from the Protein Data Bank. Clear preferences of amino acids towards certain secondary structures classify amino acids into four groups: alpha-helix preferrers, strand preferrers, turn and bend preferrers, and His and Cys (the latter two amino acids show no clear preference for any secondary structure). Amino acids in the same group have similar structural characteristics at their C beta and C gamma atoms that predicts their preference for a particular secondary structure. All alpha-helix preferrers have neither polar heteroatoms on C beta and C gamma atoms, nor branching or aromatic group on the C beta atom. All strand preferrers have aromatic groups or branching groups on the C beta atom. All turn and bend preferrers have a polar heteroatom on the C beta or C gamma atoms or do not have a C beta atom at all. These new rules could be helpful in making predictions about non-natural amino acids.
PB  - Springer, New York
T2  - Journal of Molecular Modeling
T1  - A reexamination of the propensities of amino acids towards a particular secondary structure: classification of amino acids based on their chemical structure
VL  - 14
IS  - 8
SP  - 769
EP  - 775
DO  - 10.1007/s00894-008-0313-0
ER  - 
@article{
author = "Malkov, Sasa N. and Živković, Miodrag V. and Beljanski, Milos V. and Hall, Michael B. and Zarić, Snežana D.",
year = "2008",
abstract = "The correlation between the primary and secondary structures of proteins was analysed using a large data set from the Protein Data Bank. Clear preferences of amino acids towards certain secondary structures classify amino acids into four groups: alpha-helix preferrers, strand preferrers, turn and bend preferrers, and His and Cys (the latter two amino acids show no clear preference for any secondary structure). Amino acids in the same group have similar structural characteristics at their C beta and C gamma atoms that predicts their preference for a particular secondary structure. All alpha-helix preferrers have neither polar heteroatoms on C beta and C gamma atoms, nor branching or aromatic group on the C beta atom. All strand preferrers have aromatic groups or branching groups on the C beta atom. All turn and bend preferrers have a polar heteroatom on the C beta or C gamma atoms or do not have a C beta atom at all. These new rules could be helpful in making predictions about non-natural amino acids.",
publisher = "Springer, New York",
journal = "Journal of Molecular Modeling",
title = "A reexamination of the propensities of amino acids towards a particular secondary structure: classification of amino acids based on their chemical structure",
volume = "14",
number = "8",
pages = "769-775",
doi = "10.1007/s00894-008-0313-0"
}
Malkov, S. N., Živković, M. V., Beljanski, M. V., Hall, M. B.,& Zarić, S. D.. (2008). A reexamination of the propensities of amino acids towards a particular secondary structure: classification of amino acids based on their chemical structure. in Journal of Molecular Modeling
Springer, New York., 14(8), 769-775.
https://doi.org/10.1007/s00894-008-0313-0
Malkov SN, Živković MV, Beljanski MV, Hall MB, Zarić SD. A reexamination of the propensities of amino acids towards a particular secondary structure: classification of amino acids based on their chemical structure. in Journal of Molecular Modeling. 2008;14(8):769-775.
doi:10.1007/s00894-008-0313-0 .
Malkov, Sasa N., Živković, Miodrag V., Beljanski, Milos V., Hall, Michael B., Zarić, Snežana D., "A reexamination of the propensities of amino acids towards a particular secondary structure: classification of amino acids based on their chemical structure" in Journal of Molecular Modeling, 14, no. 8 (2008):769-775,
https://doi.org/10.1007/s00894-008-0313-0 . .
63
51
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57

XH/pi interactions with the pi system of porphyrin ring in porphyrin-containing proteins

Stojanović, Srđan Đ.; Medaković, Vesna; Predovic, Goran; Beljanski, Milos; Zarić, Snežana D.

(Springer, New York, 2007)

TY  - JOUR
AU  - Stojanović, Srđan Đ.
AU  - Medaković, Vesna
AU  - Predovic, Goran
AU  - Beljanski, Milos
AU  - Zarić, Snežana D.
PY  - 2007
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/863
AB  - Searching structures of porphyrin-containing proteins from the Protein Data Bank revealed that the pi system of every porphyrin ring is involved in XH/pi interactions, with most of the porphyrins having several interactions. Both five-membered pyrrole rings and six-membered chelate rings are involved in XH/pi interactions; the number of interactions with five-membered rings is larger than the number of interactions with six-membered rings. We found interactions with C-H and N-H groups as hydrogen-atom donors; however, the number of CH/pi interactions is much larger than the number of NH/pi interactions. The amino acids involved in the interactions show a high conservation score. Our results that every porphyrin is involved in XH/pi interactions and that amino acids involved in these interactions are highly conserved demonstrate that XH/pi interactions play an important role in porphyrin-protein stability.
PB  - Springer, New York
T2  - Journal of Biological Inorganic Chemistry
T1  - XH/pi interactions with the pi system of porphyrin ring in porphyrin-containing proteins
VL  - 12
IS  - 7
SP  - 1063
EP  - 1071
DO  - 10.1007/s00775-007-0276-0
ER  - 
@article{
author = "Stojanović, Srđan Đ. and Medaković, Vesna and Predovic, Goran and Beljanski, Milos and Zarić, Snežana D.",
year = "2007",
abstract = "Searching structures of porphyrin-containing proteins from the Protein Data Bank revealed that the pi system of every porphyrin ring is involved in XH/pi interactions, with most of the porphyrins having several interactions. Both five-membered pyrrole rings and six-membered chelate rings are involved in XH/pi interactions; the number of interactions with five-membered rings is larger than the number of interactions with six-membered rings. We found interactions with C-H and N-H groups as hydrogen-atom donors; however, the number of CH/pi interactions is much larger than the number of NH/pi interactions. The amino acids involved in the interactions show a high conservation score. Our results that every porphyrin is involved in XH/pi interactions and that amino acids involved in these interactions are highly conserved demonstrate that XH/pi interactions play an important role in porphyrin-protein stability.",
publisher = "Springer, New York",
journal = "Journal of Biological Inorganic Chemistry",
title = "XH/pi interactions with the pi system of porphyrin ring in porphyrin-containing proteins",
volume = "12",
number = "7",
pages = "1063-1071",
doi = "10.1007/s00775-007-0276-0"
}
Stojanović, S. Đ., Medaković, V., Predovic, G., Beljanski, M.,& Zarić, S. D.. (2007). XH/pi interactions with the pi system of porphyrin ring in porphyrin-containing proteins. in Journal of Biological Inorganic Chemistry
Springer, New York., 12(7), 1063-1071.
https://doi.org/10.1007/s00775-007-0276-0
Stojanović SĐ, Medaković V, Predovic G, Beljanski M, Zarić SD. XH/pi interactions with the pi system of porphyrin ring in porphyrin-containing proteins. in Journal of Biological Inorganic Chemistry. 2007;12(7):1063-1071.
doi:10.1007/s00775-007-0276-0 .
Stojanović, Srđan Đ., Medaković, Vesna, Predovic, Goran, Beljanski, Milos, Zarić, Snežana D., "XH/pi interactions with the pi system of porphyrin ring in porphyrin-containing proteins" in Journal of Biological Inorganic Chemistry, 12, no. 7 (2007):1063-1071,
https://doi.org/10.1007/s00775-007-0276-0 . .
27
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27

Comparison of structural features of three new cis-dioxomolybdenum(VI) complexes with 2-hydroxy-1-naphthaldehyde-S-methylisothiosemicarbazone: Possible role of intermolecular interactions on the geometry of the cis-MoO(2) unit

Tomić, Zoran D.; Kapor, Agnes; Zmiric, Aleksandra; Leovac, Vukadin M.; Zobel, Dieter; Zarić, Snežana D.

(Elsevier Science Sa, Lausanne, 2007)

TY  - JOUR
AU  - Tomić, Zoran D.
AU  - Kapor, Agnes
AU  - Zmiric, Aleksandra
AU  - Leovac, Vukadin M.
AU  - Zobel, Dieter
AU  - Zarić, Snežana D.
PY  - 2007
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/830
AB  - Three closely related [MoO(2)(L)(ML)] complexes, where L is the 2-hydroxy-1-naphthaldehyde-S-methylisothiosemicarbazone ligand, and ML is EtOH (I), Py (II) and DMSO (III), were synthesized, characterized by NMR and IR spectra, and their X-ray crystal structures were determined. The crystal structure properties of these three closely related complexes were compared. Two cis-Mo-O bond lengths were almost the same in the crystal structure of complexes II and III, while in complex I a significant difference between the two cis-Mo-O bond lengths was observed. At the same time, the geometry of L ligand in complex I is different, compared to II and III. DFT calculations on the isolated molecule I, as well as geometrical analysis of the complexes indicate that intramolecular interactions are not responsible for these structural differences. On the other hand, the pattern of intermolecular contacts in the crystal structure of I differs from those observed in II and III. Analyses indicate that differences in cis-Mo-O bond lengths and in the geometry of ligand L could be related to intermolecular interactions. These results suggest the possibility that in enzymes oxotransferases or in their model systems, the Mo-O bond length could be designed by the interactions of chelate ligands with the surroundings. (C) 2006 Elsevier B.V. All rights reserved.
PB  - Elsevier Science Sa, Lausanne
T2  - Inorganica Chimica Acta
T1  - Comparison of structural features of three new cis-dioxomolybdenum(VI) complexes with 2-hydroxy-1-naphthaldehyde-S-methylisothiosemicarbazone: Possible role of intermolecular interactions on the geometry of the cis-MoO(2) unit
VL  - 360
IS  - 7
SP  - 2197
EP  - 2206
DO  - 10.1016/j.ica.2006.10.026
ER  - 
@article{
author = "Tomić, Zoran D. and Kapor, Agnes and Zmiric, Aleksandra and Leovac, Vukadin M. and Zobel, Dieter and Zarić, Snežana D.",
year = "2007",
abstract = "Three closely related [MoO(2)(L)(ML)] complexes, where L is the 2-hydroxy-1-naphthaldehyde-S-methylisothiosemicarbazone ligand, and ML is EtOH (I), Py (II) and DMSO (III), were synthesized, characterized by NMR and IR spectra, and their X-ray crystal structures were determined. The crystal structure properties of these three closely related complexes were compared. Two cis-Mo-O bond lengths were almost the same in the crystal structure of complexes II and III, while in complex I a significant difference between the two cis-Mo-O bond lengths was observed. At the same time, the geometry of L ligand in complex I is different, compared to II and III. DFT calculations on the isolated molecule I, as well as geometrical analysis of the complexes indicate that intramolecular interactions are not responsible for these structural differences. On the other hand, the pattern of intermolecular contacts in the crystal structure of I differs from those observed in II and III. Analyses indicate that differences in cis-Mo-O bond lengths and in the geometry of ligand L could be related to intermolecular interactions. These results suggest the possibility that in enzymes oxotransferases or in their model systems, the Mo-O bond length could be designed by the interactions of chelate ligands with the surroundings. (C) 2006 Elsevier B.V. All rights reserved.",
publisher = "Elsevier Science Sa, Lausanne",
journal = "Inorganica Chimica Acta",
title = "Comparison of structural features of three new cis-dioxomolybdenum(VI) complexes with 2-hydroxy-1-naphthaldehyde-S-methylisothiosemicarbazone: Possible role of intermolecular interactions on the geometry of the cis-MoO(2) unit",
volume = "360",
number = "7",
pages = "2197-2206",
doi = "10.1016/j.ica.2006.10.026"
}
Tomić, Z. D., Kapor, A., Zmiric, A., Leovac, V. M., Zobel, D.,& Zarić, S. D.. (2007). Comparison of structural features of three new cis-dioxomolybdenum(VI) complexes with 2-hydroxy-1-naphthaldehyde-S-methylisothiosemicarbazone: Possible role of intermolecular interactions on the geometry of the cis-MoO(2) unit. in Inorganica Chimica Acta
Elsevier Science Sa, Lausanne., 360(7), 2197-2206.
https://doi.org/10.1016/j.ica.2006.10.026
Tomić ZD, Kapor A, Zmiric A, Leovac VM, Zobel D, Zarić SD. Comparison of structural features of three new cis-dioxomolybdenum(VI) complexes with 2-hydroxy-1-naphthaldehyde-S-methylisothiosemicarbazone: Possible role of intermolecular interactions on the geometry of the cis-MoO(2) unit. in Inorganica Chimica Acta. 2007;360(7):2197-2206.
doi:10.1016/j.ica.2006.10.026 .
Tomić, Zoran D., Kapor, Agnes, Zmiric, Aleksandra, Leovac, Vukadin M., Zobel, Dieter, Zarić, Snežana D., "Comparison of structural features of three new cis-dioxomolybdenum(VI) complexes with 2-hydroxy-1-naphthaldehyde-S-methylisothiosemicarbazone: Possible role of intermolecular interactions on the geometry of the cis-MoO(2) unit" in Inorganica Chimica Acta, 360, no. 7 (2007):2197-2206,
https://doi.org/10.1016/j.ica.2006.10.026 . .
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23

Stacking vs. CH-pi interactions between chelate and aryl rings in crystal structures of square-planar transition metal complexes

Sredojević, Dušan N.; Bogdanović, Goran A.; Tomić, Zoran D.; Zarić, Snežana D.

(Royal Soc Chemistry, Cambridge, 2007)

TY  - JOUR
AU  - Sredojević, Dušan N.
AU  - Bogdanović, Goran A.
AU  - Tomić, Zoran D.
AU  - Zarić, Snežana D.
PY  - 2007
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/862
AB  - The crystal structures of square-planar transition-metal complexes from the Cambridge Structural Database (CSD) with close contacts between planar chelate rings and aryl rings containing six carbon atoms (C-6- aryl) were analyzed. Most of the chelate rings in these structures are fused with aromatic or other pi-delocalized chelate rings. The results show that planar chelate rings can be involved in stacking and CH-pi interactions with organic aryl rings. However, the number of stacking interactions is a few times larger than the number of CH-pi interactions. The analysis also shows that in almost all cases CH-pi interactions are formed only when stacking interactions are prevented by voluminous substituents. Hence, between planar chelate rings and C-6- aryl rings stacking interactions are preferred to CH-pi interactions.
PB  - Royal Soc Chemistry, Cambridge
T2  - CrystEngComm
T1  - Stacking vs. CH-pi interactions between chelate and aryl rings in crystal structures of square-planar transition metal complexes
VL  - 9
IS  - 9
SP  - 793
EP  - 798
DO  - 10.1039/b704302c
ER  - 
@article{
author = "Sredojević, Dušan N. and Bogdanović, Goran A. and Tomić, Zoran D. and Zarić, Snežana D.",
year = "2007",
abstract = "The crystal structures of square-planar transition-metal complexes from the Cambridge Structural Database (CSD) with close contacts between planar chelate rings and aryl rings containing six carbon atoms (C-6- aryl) were analyzed. Most of the chelate rings in these structures are fused with aromatic or other pi-delocalized chelate rings. The results show that planar chelate rings can be involved in stacking and CH-pi interactions with organic aryl rings. However, the number of stacking interactions is a few times larger than the number of CH-pi interactions. The analysis also shows that in almost all cases CH-pi interactions are formed only when stacking interactions are prevented by voluminous substituents. Hence, between planar chelate rings and C-6- aryl rings stacking interactions are preferred to CH-pi interactions.",
publisher = "Royal Soc Chemistry, Cambridge",
journal = "CrystEngComm",
title = "Stacking vs. CH-pi interactions between chelate and aryl rings in crystal structures of square-planar transition metal complexes",
volume = "9",
number = "9",
pages = "793-798",
doi = "10.1039/b704302c"
}
Sredojević, D. N., Bogdanović, G. A., Tomić, Z. D.,& Zarić, S. D.. (2007). Stacking vs. CH-pi interactions between chelate and aryl rings in crystal structures of square-planar transition metal complexes. in CrystEngComm
Royal Soc Chemistry, Cambridge., 9(9), 793-798.
https://doi.org/10.1039/b704302c
Sredojević DN, Bogdanović GA, Tomić ZD, Zarić SD. Stacking vs. CH-pi interactions between chelate and aryl rings in crystal structures of square-planar transition metal complexes. in CrystEngComm. 2007;9(9):793-798.
doi:10.1039/b704302c .
Sredojević, Dušan N., Bogdanović, Goran A., Tomić, Zoran D., Zarić, Snežana D., "Stacking vs. CH-pi interactions between chelate and aryl rings in crystal structures of square-planar transition metal complexes" in CrystEngComm, 9, no. 9 (2007):793-798,
https://doi.org/10.1039/b704302c . .
65
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63

Stereoselective "electrophilic" cyclometalation of planar-prochiral (eta(6)-arene)tricarbonylchromium complexes with asymmetric metal centers: pseudo-T-4 [Cp*RhCl2](2) and [Cp*IrCl2](2)

Scheeren, Carla; Maasarani, Fida; Hijazi, Akram; Đukić, Jean-Pierre; Pfeffer, Michel; Zarić, Snežana D.; Le Goff, Xavier-Frederic; Ricard, Louis

(Amer Chemical Soc, Washington, 2007)

TY  - JOUR
AU  - Scheeren, Carla
AU  - Maasarani, Fida
AU  - Hijazi, Akram
AU  - Đukić, Jean-Pierre
AU  - Pfeffer, Michel
AU  - Zarić, Snežana D.
AU  - Le Goff, Xavier-Frederic
AU  - Ricard, Louis
PY  - 2007
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/843
AB  - The reactivity of a set of prototypical (eta(6)-arene)tricarbonylchromium complexes bearing amino, oxazolyl, and pyridyl ancillary ligands versus [Cp*RhCl2](2) and [Cp*IrCl2](2) has been investigated. Successful cyclometalation reactions were achieved essentially in the presence of hydrated sodium acetate with planar-prochiral 2-phenylpyridine and 3-methyl-2-phenylpyridine complexes with yields ranging from 60% to 92%. The most salient feature of the reported reactions is their stereoselectivity, as the only diastereomers to be produced are those with the Rh- and Ir-bound chloro ligand located trans with respect to the Cr(CO)(3). According to X-ray diffraction analyses, a relative rac-(pR,T-4-S) configuration may be assigned to the complexes: the Cp* ligand sits unexpectedly syn with respect to the tricarbonylmetal moiety. Introduction of the Cr(CO)(3) moiety by treatment of cycloiridated 2-phenylpyridine with tricarbonyl(eta(6)-naphthalene)chromium resulted in a unique diastereomer of the same relative configuration. Quantum calculations using the density functional theory were carried out on models of syn and trans-chloro isomers. Owing to strong electrostatic repulsion between the chloro ligand and the Cr(CO)(3) moiety, the syn-chloro isomers were found less stable by 7-8 kcal/mol than the trans counterparts, suggesting that cyclorhodation and cycloiridation reactions are thermodynamically controlled.
PB  - Amer Chemical Soc, Washington
T2  - Organometallics
T1  - Stereoselective "electrophilic" cyclometalation of planar-prochiral (eta(6)-arene)tricarbonylchromium complexes with asymmetric metal centers: pseudo-T-4 [Cp*RhCl2](2) and [Cp*IrCl2](2)
VL  - 26
IS  - 14
SP  - 3336
EP  - 3345
DO  - 10.1021/om070170l
ER  - 
@article{
author = "Scheeren, Carla and Maasarani, Fida and Hijazi, Akram and Đukić, Jean-Pierre and Pfeffer, Michel and Zarić, Snežana D. and Le Goff, Xavier-Frederic and Ricard, Louis",
year = "2007",
abstract = "The reactivity of a set of prototypical (eta(6)-arene)tricarbonylchromium complexes bearing amino, oxazolyl, and pyridyl ancillary ligands versus [Cp*RhCl2](2) and [Cp*IrCl2](2) has been investigated. Successful cyclometalation reactions were achieved essentially in the presence of hydrated sodium acetate with planar-prochiral 2-phenylpyridine and 3-methyl-2-phenylpyridine complexes with yields ranging from 60% to 92%. The most salient feature of the reported reactions is their stereoselectivity, as the only diastereomers to be produced are those with the Rh- and Ir-bound chloro ligand located trans with respect to the Cr(CO)(3). According to X-ray diffraction analyses, a relative rac-(pR,T-4-S) configuration may be assigned to the complexes: the Cp* ligand sits unexpectedly syn with respect to the tricarbonylmetal moiety. Introduction of the Cr(CO)(3) moiety by treatment of cycloiridated 2-phenylpyridine with tricarbonyl(eta(6)-naphthalene)chromium resulted in a unique diastereomer of the same relative configuration. Quantum calculations using the density functional theory were carried out on models of syn and trans-chloro isomers. Owing to strong electrostatic repulsion between the chloro ligand and the Cr(CO)(3) moiety, the syn-chloro isomers were found less stable by 7-8 kcal/mol than the trans counterparts, suggesting that cyclorhodation and cycloiridation reactions are thermodynamically controlled.",
publisher = "Amer Chemical Soc, Washington",
journal = "Organometallics",
title = "Stereoselective "electrophilic" cyclometalation of planar-prochiral (eta(6)-arene)tricarbonylchromium complexes with asymmetric metal centers: pseudo-T-4 [Cp*RhCl2](2) and [Cp*IrCl2](2)",
volume = "26",
number = "14",
pages = "3336-3345",
doi = "10.1021/om070170l"
}
Scheeren, C., Maasarani, F., Hijazi, A., Đukić, J., Pfeffer, M., Zarić, S. D., Le Goff, X.,& Ricard, L.. (2007). Stereoselective "electrophilic" cyclometalation of planar-prochiral (eta(6)-arene)tricarbonylchromium complexes with asymmetric metal centers: pseudo-T-4 [Cp*RhCl2](2) and [Cp*IrCl2](2). in Organometallics
Amer Chemical Soc, Washington., 26(14), 3336-3345.
https://doi.org/10.1021/om070170l
Scheeren C, Maasarani F, Hijazi A, Đukić J, Pfeffer M, Zarić SD, Le Goff X, Ricard L. Stereoselective "electrophilic" cyclometalation of planar-prochiral (eta(6)-arene)tricarbonylchromium complexes with asymmetric metal centers: pseudo-T-4 [Cp*RhCl2](2) and [Cp*IrCl2](2). in Organometallics. 2007;26(14):3336-3345.
doi:10.1021/om070170l .
Scheeren, Carla, Maasarani, Fida, Hijazi, Akram, Đukić, Jean-Pierre, Pfeffer, Michel, Zarić, Snežana D., Le Goff, Xavier-Frederic, Ricard, Louis, "Stereoselective "electrophilic" cyclometalation of planar-prochiral (eta(6)-arene)tricarbonylchromium complexes with asymmetric metal centers: pseudo-T-4 [Cp*RhCl2](2) and [Cp*IrCl2](2)" in Organometallics, 26, no. 14 (2007):3336-3345,
https://doi.org/10.1021/om070170l . .
91
84
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90

Are chelate rings aromatic? Calculations of magnetic properties of acetylacetonato and o-benzoquinonediimine chelate rings

Milčić, Miloš K.; Ostojić, Bojana D.; Zarić, Snežana D.

(Amer Chemical Soc, Washington, 2007)

TY  - JOUR
AU  - Milčić, Miloš K.
AU  - Ostojić, Bojana D.
AU  - Zarić, Snežana D.
PY  - 2007
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/857
AB  - The aromaticity of the chelate rings of acetylacetonato (acac) and o-benzoquinonediimine (bqdi) ligands was investigated theoretically by calculating nucleus-independent chemical shifts (NICS). The calculations were done for the complexes with various metals and various other ligands. The results show that acac chelate rings in none of the complexes satisfy this magnetic criterion for aromaticity. According to the results for bqdi chelate rings, there is only the Ru2+-bqdi chelate ring with large negative NICS values, indicating possible aromaticity by magnetic criterion.
PB  - Amer Chemical Soc, Washington
T2  - Inorganic Chemistry
T1  - Are chelate rings aromatic? Calculations of magnetic properties of acetylacetonato and o-benzoquinonediimine chelate rings
VL  - 46
IS  - 17
SP  - 7109
EP  - 7114
DO  - 10.1021/ic062292w
ER  - 
@article{
author = "Milčić, Miloš K. and Ostojić, Bojana D. and Zarić, Snežana D.",
year = "2007",
abstract = "The aromaticity of the chelate rings of acetylacetonato (acac) and o-benzoquinonediimine (bqdi) ligands was investigated theoretically by calculating nucleus-independent chemical shifts (NICS). The calculations were done for the complexes with various metals and various other ligands. The results show that acac chelate rings in none of the complexes satisfy this magnetic criterion for aromaticity. According to the results for bqdi chelate rings, there is only the Ru2+-bqdi chelate ring with large negative NICS values, indicating possible aromaticity by magnetic criterion.",
publisher = "Amer Chemical Soc, Washington",
journal = "Inorganic Chemistry",
title = "Are chelate rings aromatic? Calculations of magnetic properties of acetylacetonato and o-benzoquinonediimine chelate rings",
volume = "46",
number = "17",
pages = "7109-7114",
doi = "10.1021/ic062292w"
}
Milčić, M. K., Ostojić, B. D.,& Zarić, S. D.. (2007). Are chelate rings aromatic? Calculations of magnetic properties of acetylacetonato and o-benzoquinonediimine chelate rings. in Inorganic Chemistry
Amer Chemical Soc, Washington., 46(17), 7109-7114.
https://doi.org/10.1021/ic062292w
Milčić MK, Ostojić BD, Zarić SD. Are chelate rings aromatic? Calculations of magnetic properties of acetylacetonato and o-benzoquinonediimine chelate rings. in Inorganic Chemistry. 2007;46(17):7109-7114.
doi:10.1021/ic062292w .
Milčić, Miloš K., Ostojić, Bojana D., Zarić, Snežana D., "Are chelate rings aromatic? Calculations of magnetic properties of acetylacetonato and o-benzoquinonediimine chelate rings" in Inorganic Chemistry, 46, no. 17 (2007):7109-7114,
https://doi.org/10.1021/ic062292w . .
69
66
72
65

Electron delocalization mediates the metal-dependent capacity for CH/pi interactions of acetylacetonato chelates

Milčić, Miloš K.; Medaković, Vesna; Sredojević, Dušan N.; Juranic, Nenad O.; Zarić, Snežana D.

(Amer Chemical Soc, Washington, 2006)

TY  - JOUR
AU  - Milčić, Miloš K.
AU  - Medaković, Vesna
AU  - Sredojević, Dušan N.
AU  - Juranic, Nenad O.
AU  - Zarić, Snežana D.
PY  - 2006
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/781
AB  - CH/pi interactions between the coordinated acetylacetonato ligand and phenyl rings were analyzed in the crystal structures from the Cambridge Structural Database and by quantum chemical calculations. The acetylacetonato ligand may engage in two types of interactions: it can be hydrogen atom donor or acceptor. The analysis of crystal structures and calculations show that interactions with the acetylacetonato ligand acting as hydrogen atom donor depend on the metal in an acetylacetonato chelate ring; the chelate rings with soft metals make stronger interactions. The same trend was not observed in the interactions where the acetylacetonato chelate ring acts as the hydrogen atom acceptor.
PB  - Amer Chemical Soc, Washington
T2  - Inorganic Chemistry
T1  - Electron delocalization mediates the metal-dependent capacity for CH/pi interactions of acetylacetonato chelates
VL  - 45
IS  - 12
SP  - 4755
EP  - 4763
DO  - 10.1021/ic051926g
ER  - 
@article{
author = "Milčić, Miloš K. and Medaković, Vesna and Sredojević, Dušan N. and Juranic, Nenad O. and Zarić, Snežana D.",
year = "2006",
abstract = "CH/pi interactions between the coordinated acetylacetonato ligand and phenyl rings were analyzed in the crystal structures from the Cambridge Structural Database and by quantum chemical calculations. The acetylacetonato ligand may engage in two types of interactions: it can be hydrogen atom donor or acceptor. The analysis of crystal structures and calculations show that interactions with the acetylacetonato ligand acting as hydrogen atom donor depend on the metal in an acetylacetonato chelate ring; the chelate rings with soft metals make stronger interactions. The same trend was not observed in the interactions where the acetylacetonato chelate ring acts as the hydrogen atom acceptor.",
publisher = "Amer Chemical Soc, Washington",
journal = "Inorganic Chemistry",
title = "Electron delocalization mediates the metal-dependent capacity for CH/pi interactions of acetylacetonato chelates",
volume = "45",
number = "12",
pages = "4755-4763",
doi = "10.1021/ic051926g"
}
Milčić, M. K., Medaković, V., Sredojević, D. N., Juranic, N. O.,& Zarić, S. D.. (2006). Electron delocalization mediates the metal-dependent capacity for CH/pi interactions of acetylacetonato chelates. in Inorganic Chemistry
Amer Chemical Soc, Washington., 45(12), 4755-4763.
https://doi.org/10.1021/ic051926g
Milčić MK, Medaković V, Sredojević DN, Juranic NO, Zarić SD. Electron delocalization mediates the metal-dependent capacity for CH/pi interactions of acetylacetonato chelates. in Inorganic Chemistry. 2006;45(12):4755-4763.
doi:10.1021/ic051926g .
Milčić, Miloš K., Medaković, Vesna, Sredojević, Dušan N., Juranic, Nenad O., Zarić, Snežana D., "Electron delocalization mediates the metal-dependent capacity for CH/pi interactions of acetylacetonato chelates" in Inorganic Chemistry, 45, no. 12 (2006):4755-4763,
https://doi.org/10.1021/ic051926g . .
79
70
78
77

CH/pi interactions of pi-system of acetylacetonato chelate ring: Comparison of CH/pi interactions of Ni(II)-acetylacetonato chelate and benzene rings

Milčić, Miloš K.; Medaković, Vesna; Zarić, Snežana D.

(Elsevier Science Sa, Lausanne, 2006)

TY  - JOUR
AU  - Milčić, Miloš K.
AU  - Medaković, Vesna
AU  - Zarić, Snežana D.
PY  - 2006
UR  - https://cherry.chem.bg.ac.rs/handle/123456789/805
AB  - The calculations have been done for CH/pi interaction with pi-system of Ni(II)-acetylacetonato chelate ring. The results show that there is an attractive electrostatic interaction, while dispersion component is a major source of attractive interacting energies. The interaction was compared with CH/pi, interaction between two benzene rings. The comparison shows that two interactions are quite similar, enabling to estimate the energy of CH/pi interaction with pi-system of Ni(II)-acetylacetonato chelate ring to be about 10.5 kJ/mol. The results indicate that CH/pi interactions of chelate ring in various molecular systems can be as important as CH/pi interactions of phenyl ring. (c) 2006 Elsevier B.V. All rights reserved.
PB  - Elsevier Science Sa, Lausanne
T2  - Inorganica Chimica Acta
T1  - CH/pi interactions of pi-system of acetylacetonato chelate ring: Comparison of CH/pi interactions of Ni(II)-acetylacetonato chelate and benzene rings
VL  - 359
IS  - 13
SP  - 4427
EP  - 4430
DO  - 10.1016/j.ica.2006.06.022
ER  - 
@article{
author = "Milčić, Miloš K. and Medaković, Vesna and Zarić, Snežana D.",
year = "2006",
abstract = "The calculations have been done for CH/pi interaction with pi-system of Ni(II)-acetylacetonato chelate ring. The results show that there is an attractive electrostatic interaction, while dispersion component is a major source of attractive interacting energies. The interaction was compared with CH/pi, interaction between two benzene rings. The comparison shows that two interactions are quite similar, enabling to estimate the energy of CH/pi interaction with pi-system of Ni(II)-acetylacetonato chelate ring to be about 10.5 kJ/mol. The results indicate that CH/pi interactions of chelate ring in various molecular systems can be as important as CH/pi interactions of phenyl ring. (c) 2006 Elsevier B.V. All rights reserved.",
publisher = "Elsevier Science Sa, Lausanne",
journal = "Inorganica Chimica Acta",
title = "CH/pi interactions of pi-system of acetylacetonato chelate ring: Comparison of CH/pi interactions of Ni(II)-acetylacetonato chelate and benzene rings",
volume = "359",
number = "13",
pages = "4427-4430",
doi = "10.1016/j.ica.2006.06.022"
}
Milčić, M. K., Medaković, V.,& Zarić, S. D.. (2006). CH/pi interactions of pi-system of acetylacetonato chelate ring: Comparison of CH/pi interactions of Ni(II)-acetylacetonato chelate and benzene rings. in Inorganica Chimica Acta
Elsevier Science Sa, Lausanne., 359(13), 4427-4430.
https://doi.org/10.1016/j.ica.2006.06.022
Milčić MK, Medaković V, Zarić SD. CH/pi interactions of pi-system of acetylacetonato chelate ring: Comparison of CH/pi interactions of Ni(II)-acetylacetonato chelate and benzene rings. in Inorganica Chimica Acta. 2006;359(13):4427-4430.
doi:10.1016/j.ica.2006.06.022 .
Milčić, Miloš K., Medaković, Vesna, Zarić, Snežana D., "CH/pi interactions of pi-system of acetylacetonato chelate ring: Comparison of CH/pi interactions of Ni(II)-acetylacetonato chelate and benzene rings" in Inorganica Chimica Acta, 359, no. 13 (2006):4427-4430,
https://doi.org/10.1016/j.ica.2006.06.022 . .
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21