Special Research Fund (BOF) of Ghent University (grant number 01N01718)

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Special Research Fund (BOF) of Ghent University (grant number 01N01718)

Authors

Publications

Redox status of critical disulfides of SARS-CoV-2 receptor-binding-domain exposed to bioactive chomophore phycocyanobilin

Simović, Ana; Bićanin, Maša; Radomirović, Mirjana Ž.; Aćimovič, Jelena; Mitić, Dragana; Stanić-Vučinić, Dragana; Ćirković-Veličković, Tanja

(Italian Proteomics Association, 2023)

TY  - CONF
AU  - Simović, Ana
AU  - Bićanin, Maša
AU  - Radomirović, Mirjana Ž.
AU  - Aćimovič, Jelena
AU  - Mitić, Dragana
AU  - Stanić-Vučinić, Dragana
AU  - Ćirković-Veličković, Tanja
PY  - 2023
UR  - http://cherry.chem.bg.ac.rs/handle/123456789/6418
AB  - The emergence of the novel coronavirus SARS-CoV-2 has attracted the attention of the whole scientific community. However, as there are significant concerns regarding the effectiveness of vaccines and drugs against novel SARS-CoV-2 variants, naturally derived broad-spectrum of antivirals seems to be precious adjuvant agents to assist in combat against this disease. Phycocyanobilin (PCB) is an open-chain tetrapyrrole chromophore of phycocyanin (PC), chromoprotein derived from Spirullina, with strong anti-oxidative action. The role of disulfide bonds and thiol-disulfide balance in RBD is considered to play a significant role in the binding of S protein to ACE2 receptor. In RBD, in contrast to C480–C488 disulfide, which is thermodynamically stable, C379–C432 and C391–C525 disulfides are in dynamic equilibrium with their thiol states and, thus these two pairs of disulfides are more sensitive to changes in redox poise. Our study aimed to investigate impact of PCB on disulfide balance of RBD by redox proteomics and to investigate structural changes in the protein exposed to PCB. The effect of PCB on RBD secondary structures was examined by far-UV CD spectroscopy after titration of RBD with increasing concentrations of PCB. The presence of PCB had a pronounced effect on the spectral shape. RBD is dominantly composed of random coils and β-sheets. In the presence of PCB a slight increase of α-helical and random coils content, while the content of β-sheets and β-turns is decreased. Mapping redox-active disulfides and reactive cysteines in recombinant SARS-CoV-2 RBD was done using redox proteomics on both recombinant RBD and PCB-exposed RBD. A mass shift caused by alkylation of free Cys residues was detected on three Cys residues demonstrating disulfides C379–C432 and 432-391 to be semi-stable in both RBD and PCB-exposed RBD. Our results demonstrate that RBD exposed to PCB undergo structural changes but does not change the redox state of its critical semi-stable disulfides.
Acknowledgment: The authors acknowledge support of the special Research Fund (BOF) of Ghent University (grant number 01N01718) and the Ministry of Science, Innovation and technological development of the Republic of Serbia (Contract number: 451-03-68/2023-14/200168).
PB  - Italian Proteomics Association
C3  - ItPA HPS and SePA XVII International Congress: Proteomics and Metabolomics towards Global Health, November 29th – December 1st, 2023, Roma, Italy
T1  - Redox status of critical disulfides of SARS-CoV-2 receptor-binding-domain exposed to bioactive chomophore phycocyanobilin
SP  - 63
EP  - 63
UR  - https://hdl.handle.net/21.15107/rcub_cherry_6418
ER  - 
@conference{
author = "Simović, Ana and Bićanin, Maša and Radomirović, Mirjana Ž. and Aćimovič, Jelena and Mitić, Dragana and Stanić-Vučinić, Dragana and Ćirković-Veličković, Tanja",
year = "2023",
abstract = "The emergence of the novel coronavirus SARS-CoV-2 has attracted the attention of the whole scientific community. However, as there are significant concerns regarding the effectiveness of vaccines and drugs against novel SARS-CoV-2 variants, naturally derived broad-spectrum of antivirals seems to be precious adjuvant agents to assist in combat against this disease. Phycocyanobilin (PCB) is an open-chain tetrapyrrole chromophore of phycocyanin (PC), chromoprotein derived from Spirullina, with strong anti-oxidative action. The role of disulfide bonds and thiol-disulfide balance in RBD is considered to play a significant role in the binding of S protein to ACE2 receptor. In RBD, in contrast to C480–C488 disulfide, which is thermodynamically stable, C379–C432 and C391–C525 disulfides are in dynamic equilibrium with their thiol states and, thus these two pairs of disulfides are more sensitive to changes in redox poise. Our study aimed to investigate impact of PCB on disulfide balance of RBD by redox proteomics and to investigate structural changes in the protein exposed to PCB. The effect of PCB on RBD secondary structures was examined by far-UV CD spectroscopy after titration of RBD with increasing concentrations of PCB. The presence of PCB had a pronounced effect on the spectral shape. RBD is dominantly composed of random coils and β-sheets. In the presence of PCB a slight increase of α-helical and random coils content, while the content of β-sheets and β-turns is decreased. Mapping redox-active disulfides and reactive cysteines in recombinant SARS-CoV-2 RBD was done using redox proteomics on both recombinant RBD and PCB-exposed RBD. A mass shift caused by alkylation of free Cys residues was detected on three Cys residues demonstrating disulfides C379–C432 and 432-391 to be semi-stable in both RBD and PCB-exposed RBD. Our results demonstrate that RBD exposed to PCB undergo structural changes but does not change the redox state of its critical semi-stable disulfides.
Acknowledgment: The authors acknowledge support of the special Research Fund (BOF) of Ghent University (grant number 01N01718) and the Ministry of Science, Innovation and technological development of the Republic of Serbia (Contract number: 451-03-68/2023-14/200168).",
publisher = "Italian Proteomics Association",
journal = "ItPA HPS and SePA XVII International Congress: Proteomics and Metabolomics towards Global Health, November 29th – December 1st, 2023, Roma, Italy",
title = "Redox status of critical disulfides of SARS-CoV-2 receptor-binding-domain exposed to bioactive chomophore phycocyanobilin",
pages = "63-63",
url = "https://hdl.handle.net/21.15107/rcub_cherry_6418"
}
Simović, A., Bićanin, M., Radomirović, M. Ž., Aćimovič, J., Mitić, D., Stanić-Vučinić, D.,& Ćirković-Veličković, T.. (2023). Redox status of critical disulfides of SARS-CoV-2 receptor-binding-domain exposed to bioactive chomophore phycocyanobilin. in ItPA HPS and SePA XVII International Congress: Proteomics and Metabolomics towards Global Health, November 29th – December 1st, 2023, Roma, Italy
Italian Proteomics Association., 63-63.
https://hdl.handle.net/21.15107/rcub_cherry_6418
Simović A, Bićanin M, Radomirović MŽ, Aćimovič J, Mitić D, Stanić-Vučinić D, Ćirković-Veličković T. Redox status of critical disulfides of SARS-CoV-2 receptor-binding-domain exposed to bioactive chomophore phycocyanobilin. in ItPA HPS and SePA XVII International Congress: Proteomics and Metabolomics towards Global Health, November 29th – December 1st, 2023, Roma, Italy. 2023;:63-63.
https://hdl.handle.net/21.15107/rcub_cherry_6418 .
Simović, Ana, Bićanin, Maša, Radomirović, Mirjana Ž., Aćimovič, Jelena, Mitić, Dragana, Stanić-Vučinić, Dragana, Ćirković-Veličković, Tanja, "Redox status of critical disulfides of SARS-CoV-2 receptor-binding-domain exposed to bioactive chomophore phycocyanobilin" in ItPA HPS and SePA XVII International Congress: Proteomics and Metabolomics towards Global Health, November 29th – December 1st, 2023, Roma, Italy (2023):63-63,
https://hdl.handle.net/21.15107/rcub_cherry_6418 .

Implications of Polystyrene Microplastics on the Gastric Digestion of Bovine Milk

de Guzman, Maria Krishna; Wimmer, Lukas; Dailey, Lea Ann; Van Haute, Sam; Ćirković-Veličković, Tanja

(University of Ljubljana Press, 2022)

TY  - CONF
AU  - de Guzman, Maria Krishna
AU  - Wimmer, Lukas
AU  - Dailey, Lea Ann
AU  - Van Haute, Sam
AU  - Ćirković-Veličković, Tanja
PY  - 2022
UR  - http://cherry.chem.bg.ac.rs/handle/123456789/5908
AB  - The prevalence of microplastics (MP) pollution in
different zones of the environment has been
established by several studies [1]. Due to its
widespread presence, MP have found its way into
food items. Fish, shellfish, water, milk, salt, and
sugar are just some examples of the food we
commonly consume that are contaminated with MP
[2]. Human ingestion of MP is already well-established
but there is limited data regarding how
MP affect human gastric digestion of food
components, especially proteins.
In this study, we investigated the effects of
polystyrene (PS) MP on pepsin, the major protease
in human gastric digestion. Pepsin activity was
tested during exposure to two different sizes -10 μm
(PS10) and 100 μm (PS100), and three different
quantities- low count (142 particles), moderate
count (1420 particles), and high count
(14200 particles), of PS using haemoglobin as
substrate. Results showed that exposure to PS100
has no effect on enzyme activity. However,
exposure to high count PS10 considerably reduced
pepsin activity from 2957 ± 310 U/mg to 1674 ± 270
U/mg.
To test the effect on food digestion, high count
PS10 was added to a sample of commercially
available liquid bovine milk (defatted). In this case,
the static in vitro simulation of gastric digestion was
followed to mimic human digestion of food [3].
Milk digesta at different time points (5, 10, 15, 20,
30, 60, 90, 120 minutes) were obtained to monitor
the progress of protein degradation.
SDS-PAGE showed no difference in the peptide
bands from 30-120 minutes. However, bands
corresponding to caseins were not observed at 5
minutes when PS10 was present. Additionally,
14 kDa fragments were not observed at 10-20
minutes.
Washing of the PS particles followed by SDSPAGE
revealed a faint pepsin band from all time
points. At 5 and 10 minutes, faint peptide bands
>10kDa were also observed. These suggest that
pepsin and some milk peptides were adsorbed on
the surface of PS10. Zeta potential analysis of PS
revealed a slightly negative surface charge which
could explain the adsorption and disappearance of
peptide bands. This adsorption of pepsin on PS did
not seem to affect its overall protease activity.
However, the interaction of milk peptides with PS
may reduce the nutrients human could acquire from
milk.
Acknowledgements
This study was supported by Ghent University
Global Campus; Special Research Fund (BOF) of
Ghent University (grant number 01N01718) and
IMPTOX European Union’s Horizon 2020 research
and innovation program (grant number 965173).
References
[1] S. Sharma, S. Basu, N. P. Shetti, M. N. Nadagouda, T.
M. Aminabhavi (2021) Chem. Eng. J., 408, 127317.
[2] K. D. Cox, G. A. Covernton, H. L. Davies, J. F. Dower,
F. Juanes, S. E. Dudas (2019) Environ. Sci. Technol.,
53(12), 7068–7074.
[3] A. Brodkorb et al. (2019) Nat. Protoc., 14(4), 991–
1014.
PB  - University of Ljubljana Press
C3  - Book of Abstracts of the 22nd European Meeting on Environmental Chemistry, Ljubljana, Slovenia, 5-8 December 2022
T1  - Implications of Polystyrene Microplastics on the Gastric Digestion of Bovine Milk
SP  - 124
EP  - 124
UR  - https://hdl.handle.net/21.15107/rcub_cherry_5908
ER  - 
@conference{
author = "de Guzman, Maria Krishna and Wimmer, Lukas and Dailey, Lea Ann and Van Haute, Sam and Ćirković-Veličković, Tanja",
year = "2022",
abstract = "The prevalence of microplastics (MP) pollution in
different zones of the environment has been
established by several studies [1]. Due to its
widespread presence, MP have found its way into
food items. Fish, shellfish, water, milk, salt, and
sugar are just some examples of the food we
commonly consume that are contaminated with MP
[2]. Human ingestion of MP is already well-established
but there is limited data regarding how
MP affect human gastric digestion of food
components, especially proteins.
In this study, we investigated the effects of
polystyrene (PS) MP on pepsin, the major protease
in human gastric digestion. Pepsin activity was
tested during exposure to two different sizes -10 μm
(PS10) and 100 μm (PS100), and three different
quantities- low count (142 particles), moderate
count (1420 particles), and high count
(14200 particles), of PS using haemoglobin as
substrate. Results showed that exposure to PS100
has no effect on enzyme activity. However,
exposure to high count PS10 considerably reduced
pepsin activity from 2957 ± 310 U/mg to 1674 ± 270
U/mg.
To test the effect on food digestion, high count
PS10 was added to a sample of commercially
available liquid bovine milk (defatted). In this case,
the static in vitro simulation of gastric digestion was
followed to mimic human digestion of food [3].
Milk digesta at different time points (5, 10, 15, 20,
30, 60, 90, 120 minutes) were obtained to monitor
the progress of protein degradation.
SDS-PAGE showed no difference in the peptide
bands from 30-120 minutes. However, bands
corresponding to caseins were not observed at 5
minutes when PS10 was present. Additionally,
14 kDa fragments were not observed at 10-20
minutes.
Washing of the PS particles followed by SDSPAGE
revealed a faint pepsin band from all time
points. At 5 and 10 minutes, faint peptide bands
>10kDa were also observed. These suggest that
pepsin and some milk peptides were adsorbed on
the surface of PS10. Zeta potential analysis of PS
revealed a slightly negative surface charge which
could explain the adsorption and disappearance of
peptide bands. This adsorption of pepsin on PS did
not seem to affect its overall protease activity.
However, the interaction of milk peptides with PS
may reduce the nutrients human could acquire from
milk.
Acknowledgements
This study was supported by Ghent University
Global Campus; Special Research Fund (BOF) of
Ghent University (grant number 01N01718) and
IMPTOX European Union’s Horizon 2020 research
and innovation program (grant number 965173).
References
[1] S. Sharma, S. Basu, N. P. Shetti, M. N. Nadagouda, T.
M. Aminabhavi (2021) Chem. Eng. J., 408, 127317.
[2] K. D. Cox, G. A. Covernton, H. L. Davies, J. F. Dower,
F. Juanes, S. E. Dudas (2019) Environ. Sci. Technol.,
53(12), 7068–7074.
[3] A. Brodkorb et al. (2019) Nat. Protoc., 14(4), 991–
1014.",
publisher = "University of Ljubljana Press",
journal = "Book of Abstracts of the 22nd European Meeting on Environmental Chemistry, Ljubljana, Slovenia, 5-8 December 2022",
title = "Implications of Polystyrene Microplastics on the Gastric Digestion of Bovine Milk",
pages = "124-124",
url = "https://hdl.handle.net/21.15107/rcub_cherry_5908"
}
de Guzman, M. K., Wimmer, L., Dailey, L. A., Van Haute, S.,& Ćirković-Veličković, T.. (2022). Implications of Polystyrene Microplastics on the Gastric Digestion of Bovine Milk. in Book of Abstracts of the 22nd European Meeting on Environmental Chemistry, Ljubljana, Slovenia, 5-8 December 2022
University of Ljubljana Press., 124-124.
https://hdl.handle.net/21.15107/rcub_cherry_5908
de Guzman MK, Wimmer L, Dailey LA, Van Haute S, Ćirković-Veličković T. Implications of Polystyrene Microplastics on the Gastric Digestion of Bovine Milk. in Book of Abstracts of the 22nd European Meeting on Environmental Chemistry, Ljubljana, Slovenia, 5-8 December 2022. 2022;:124-124.
https://hdl.handle.net/21.15107/rcub_cherry_5908 .
de Guzman, Maria Krishna, Wimmer, Lukas, Dailey, Lea Ann, Van Haute, Sam, Ćirković-Veličković, Tanja, "Implications of Polystyrene Microplastics on the Gastric Digestion of Bovine Milk" in Book of Abstracts of the 22nd European Meeting on Environmental Chemistry, Ljubljana, Slovenia, 5-8 December 2022 (2022):124-124,
https://hdl.handle.net/21.15107/rcub_cherry_5908 .